Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00043 ATGCAAGAATTTCTGGGTTCCGTTCGCCGATCCTTGGTTTTCAGGAGCCCAGGCGGGGACGATGGAGGGTTTGGCGTTGGCGGTCTGGTCGATAAGATTGGCTCCAGCATTCGCAAATCACGAATTGGGCTCTTCTCCCAGCCACGCGTTAGGGCTCTGCCGCCGGTTCCCAGGGACAACACTCCTTCGATCCGGTGGCGGAAGGGCGAGTTGATTGGTTGTGGTGCCTTTGGCCGTGTCTACATGGGTATGAACCTTGATTCCGGGGAGCTTATTGCTGTCAAGCAGGTTTTAATCGCGGCAAGGAGTGCTTCAAAAGAGAAAACACAGGCTCACATTTCGGAGCTTGAAGAGGAAGTGAAGCTTCTCAAGAATCTTAAACATCCAAATATTGTTAGATACTTGGGAACTGCTAGGGAGGAGGATTCCTTGAATATTCTGCTGGAATTTGTACCAGGAGGATCTATCTCATCACTCCTGGGGAAATTTGAATCCTTCCCCGAGTCTGTAATAAAAATGTATACAAAACAACTCTTACTGGGTCTTGAGTACCTTCACAAGAATGGAATTATCCACAGAGATATTAAGGGAGCGAACATTCTTGTTGATAATAAAGGATGCATTAAACTCGCAGACTTTGGTGCATCTAAGAAAGTAGTCGAGCTGGCTACCATGAATGGTGCAAAATCAATGAAAGGTACTCCGTATTGGATGGCTCCTGAAGTTATTCTGCAGACAGGGCATAGCTTTTCTGCTGATATTTGGAGTGTTGGATGCACCGTGATAGAGATGGCAACAGGGAAGCCTCCATGGAGTGAACAGTTTCAGGAGGTTGCTGCTCTTTTTCATATTGGGACAACTAAATCCCATCCACCCATACCTGACCATCTCTCGGTTGAGGCAAAGGATTTTTTGTTAAAATGCTTGCAGAAGGAACCAGATCTAAGGCCTTCTGCATCAGATCTGTTACAGCATCCATTTGTCACCTGCGAGTACCAAGAATCTAATCCCACATTATGCAGTTCAGCTGTGGAATCTTGCAAGAAGATGGTAACATCTGGGACAGATTCTAAAATCTCGGGAATAGGTCTCAAGGATGTTTGTCAGATGGATAGCATAAAACGCTCATCCATGTCTCCTGAGACTCTTTTAAAATCAGATTTCTATCATCCAACAAGCAATTATGATGATGACATGTGTCAAATAGATGACAAAGATGACCTTTTTGTTGATGCGTCTATGAAGTCTAATTCTCACATTCCATCAGATGATATAAAGAGTTTCAACCCTATGTGTGAACCTATGGATGAATGGCCATGCAATTTCGATAGAAGTCCAGATTTGGAGAGAAAGGGAACAAACTTGTCTCCTGATCAGACAATCAACAATACAATGAGAAGCACTGAAGCATCTCAAAAGGCGGAGAACGAATTTTTATTTCCAAGTGAGCCTGTAGGAGCTGATGACGATGAAGAAGTCACTGAGTCAAAAATTAGAGCTTTTCTAGATGAAAAGGCTCTGGAACTGAAGAAACTCCAATCTCCTCTTTACGAAGAATTCTTTAGCATATCAAACGCCGCTGTTCCCTCCATTCCGGTTTCAGTTGCACGCAATGAAGTAGTTTCGGAAGTGTCAAATTTAACACCAAAAAGCAGGTCACCTAGTCAGGCCAGCAGACGATACTCAATGGCCGATGGTGCTAATATTGCAAGGCATGGAAGTCATAACAAAAATCAATCTAAAGTTAGTGGTGCAAGTGGTCGGCCTTTGCAGGAAATCCACCCATCTGAGCTTAACGAATGGAAAGAGACACTTCAATATTCTAAGTTGGAATCATTTAGTGCTAGCCCAACTTTCTCGGAGATACAAAGGAAATGGAAGGAAGAACTTGTTGAAGAGCTTGAGAGGAAGCGAGAGATGATGCGTCTGTCAGGCTTAGGAGGGAAGATTACATCGCCAACTGATCGCAATTTTCGTAAACCGACAGATAGATCACGCTTTGCATTTCCAAGCTAG 2016 0.4395 MQEFLGSVRRSLVFRSPGGDDGGFGVGGLVDKIGSSIRKSRIGLFSQPRVRALPPVPRDNTPSIRWRKGELIGCGAFGRVYMGMNLDSGELIAVKQVLIAARSASKEKTQAHISELEEEVKLLKNLKHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFESFPESVIKMYTKQLLLGLEYLHKNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELATMNGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSEQFQEVAALFHIGTTKSHPPIPDHLSVEAKDFLLKCLQKEPDLRPSASDLLQHPFVTCEYQESNPTLCSSAVESCKKMVTSGTDSKISGIGLKDVCQMDSIKRSSMSPETLLKSDFYHPTSNYDDDMCQIDDKDDLFVDASMKSNSHIPSDDIKSFNPMCEPMDEWPCNFDRSPDLERKGTNLSPDQTINNTMRSTEASQKAENEFLFPSEPVGADDDEEVTESKIRAFLDEKALELKKLQSPLYEEFFSISNAAVPSIPVSVARNEVVSEVSNLTPKSRSPSQASRRYSMADGANIARHGSHNKNQSKVSGASGRPLQEIHPSELNEWKETLQYSKLESFSASPTFSEIQRKWKEELVEELERKREMMRLSGLGGKITSPTDRNFRKPTDRSRFAFPS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00043 671 ProSiteProfiles Protein kinase domain profile. 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5300g00043 671 MobiDBLite consensus disorder prediction 644 671 - -
Pral5300g00043 671 FunFam Mitogen-activated protein kinase kinase kinase 2 65 356 - -
Pral5300g00043 671 Coils Coil 106 126 - -
Pral5300g00043 671 MobiDBLite consensus disorder prediction 572 586 - -
Pral5300g00043 671 MobiDBLite consensus disorder prediction 570 593 - -
Pral5300g00043 671 CDD STKc_MAPKKK 65 328 - -
Pral5300g00043 671 SUPERFAMILY Protein kinase-like (PK-like) 65 329 IPR011009 -
Pral5300g00043 671 Gene3D Transferase(Phosphotransferase) domain 1 65 360 - -
Pral5300g00043 671 Pfam Protein kinase domain 67 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5300g00043 671 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 61 338 - -
Pral5300g00043 671 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Pral5300g00043 671 FunFam Serine/threonine-protein kinase STE11 62 156 - -
Pral5300g00043 671 SMART serkin_6 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5300g00043 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00043 Pral-Chr5300 275961 281795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00043 1 649 MAP Kinase Kinase Kinase AT3G06030 58.886 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pral5300g00043 Pkinase 4.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00043 K20606 - cave:132182886 871.307