Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00040 ATGGCAATTGTAGACAGCATTGTCAGTCTCTTTCTTCTCACTATGCTCATTCTCATCGTCGTCCTTGTCTTCTTTGCCTGTAAACCATGGCGCTTCCTTTTCTCTTCCCGGCCCCGTTCCTCCATCAAGGGTAATGAACTTGAGAGGCCTCTTGTCTTAGATGATGCAAATTTGGTGCATAACCCAAGTAGTGAATTGCCTATAGACTATGATCTTGAGGGTGCATCCATCCCCAATGAAGGTTATTTTCGCCCACCGCGACCCCCTGGACTTATTTATAAGCAAAGGCTTTCTGCTGCTTCTTGCCACATGCCTCAAGATGTAGTTTCTGTTCCCTCAGAAGACGTTGCTGTTGGCCAGACACTTAAACTGTCCCCAGCCCAGTTTGCAGAGTTTCAGAAGCATAATAAAAATTTTGAAACTGACAGACTGCAAGACTTTGTACAGAGAGATATAATAGATCAAAGTGCAGGAAGTTGCCTCACTCTAGAGGTGATCACTGGTCCTTCTCGTGGACTCCGTTGTTCTGTACAATCAGCAATTCCATCCAAGCTACCGCTGACCCTGGGAAGAGTTTCCCCAAGTGATTTGTTAATAAAGGATTCAGAAGTGTCAGGAAAGCATGCCCTAATAAACTGGAATTTGGAGAAAATGAAATGGGAGTTGGTAGATATGGGTAGCCTTAATGGGACACTTTTGAATTCTCAACCAATCAAACATTTAGACCCCGGAAGCAGGCAATGGAGTAATCCAATTGAGCTTGCTAATGGAGATATCATAACACTGGGAATGACATCAAAAGTAATTGTTCATATTACTTCTCAAAATAAGATTCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCCATGTCTAGGCGTCGAGGAGGGAAAAAGCTGGCCATGGAAGATGTTTGCTATTATCAATGGCCTTTACTTGGGTTAGATAAGTTTGGTCTGTTTGGCGTTTGTGATGGGCATGGTGGAGATGGGGCTGCCAGATCTGCTAGCAAACTTTTCCCTGAGATAGTTGCAAATATATTATCAGATTCACTAAAAAGAGAGAAGGTTGTATCACTCTGTGATGCTTCAGATGTTCTAAGGGATGCATTTTCTCAAACAGAAGCTTGCATGAATCACTATTATGAGGGATGTACAGCTACAGTGCTTCTAGTTTGGGGTGATGGCAATGAAAATTTCTTTGCACAATGTGCAAATGTTGGAGACTCTGCCTGCGTTATGAATGTTGATGATAAAGAAATTAGGATGACGGAAGATCATAAGGTGACAAGTTGTTCTGAAAGGCTACGAATTGAAGAGACAGGCGAACCTCTGAGAGATGGGGAAACACGTCTATATGGTATAAATCTTGCGAGGATGCTTGGAGACAAATTTCTTAAACAGCAGGATTCTCGTTTCAGTTCAGAGCCTTATATAAGTCAAGTTGTGCACATTGATCAGGCAAGCAGGGCTTTTGCCATACTAGCAAGTGATGGGCTATGGGATGTCATGAGCGGGAAGAAAGCAATTCAGCTAGTGCTTCAGATGAGAGACAAGTACTCGACAGATGATGATAATTCAGCGGAAAAGATTGCAAATTTGCTGTTGAGTGAGGCTAGAACACTCAGAACAAAGGATAACACCTCAGAAATGGTATATGTGGTGCTTTCCTCAGATCGCCTTCCTTTTTCTGTGTCGTCTCATGCTCAATCTGCGGAATCAATAATTCTTCGCCAATTACTTCTCCTGCCCTCTTTTCTTTTTCTCCTCCTCGTCCTTCGCCATTTCAGATGTTTGACATTTCGGTTTTAA 1812 0.4277 MAIVDSIVSLFLLTMLILIVVLVFFACKPWRFLFSSRPRSSIKGNELERPLVLDDANLVHNPSSELPIDYDLEGASIPNEGYFRPPRPPGLIYKQRLSAASCHMPQDVVSVPSEDVAVGQTLKLSPAQFAEFQKHNKNFETDRLQDFVQRDIIDQSAGSCLTLEVITGPSRGLRCSVQSAIPSKLPLTLGRVSPSDLLIKDSEVSGKHALINWNLEKMKWELVDMGSLNGTLLNSQPIKHLDPGSRQWSNPIELANGDIITLGMTSKVIVHITSQNKIHIPFGVGMASDPMSRRRGGKKLAMEDVCYYQWPLLGLDKFGLFGVCDGHGGDGAARSASKLFPEIVANILSDSLKREKVVSLCDASDVLRDAFSQTEACMNHYYEGCTATVLLVWGDGNENFFAQCANVGDSACVMNVDDKEIRMTEDHKVTSCSERLRIEETGEPLRDGETRLYGINLARMLGDKFLKQQDSRFSSEPYISQVVHIDQASRAFAILASDGLWDVMSGKKAIQLVLQMRDKYSTDDDNSAEKIANLLLSEARTLRTKDNTSEMVYVVLSSDRLPFSVSSHAQSAESIILRQLLLLPSFLFLLLVLRHFRCLTFRF 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00040 603 FunFam Protein phosphatase 2C 70 291 561 - -
Pral5300g00040 603 SUPERFAMILY SMAD/FHA domain 160 269 IPR008984 GO:0005515
Pral5300g00040 603 PANTHER PROTEIN PHOSPHATASE 2C 277 552 IPR015655 GO:0004722|GO:0006470
Pral5300g00040 603 Gene3D - 291 560 IPR036457 -
Pral5300g00040 603 Pfam Protein phosphatase 2C 293 548 IPR001932 -
Pral5300g00040 603 ProSitePatterns PPM-type phosphatase domain signature. 320 328 IPR000222 GO:0043169
Pral5300g00040 603 ProSiteProfiles PPM-type phosphatase domain profile. 283 555 IPR001932 -
Pral5300g00040 603 SMART PP2C_4 277 553 IPR001932 -
Pral5300g00040 603 SMART FHA_2 186 238 IPR000253 GO:0005515
Pral5300g00040 603 CDD FHA_PP2C70-like 161 271 - -
Pral5300g00040 603 ProSiteProfiles Forkhead-associated (FHA) domain profile. 187 238 IPR000253 GO:0005515
Pral5300g00040 603 SUPERFAMILY PP2C-like 296 552 IPR036457 -
Pral5300g00040 603 Gene3D - 155 290 - -
Pral5300g00040 603 FunFam Protein phosphatase 2C 70 156 290 - -
Pral5300g00040 603 CDD PP2Cc 295 552 IPR001932 -
Pral5300g00040 603 Pfam FHA domain 188 263 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00040 Pral-Chr5300 244472 251250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00040 1 554 PP2C-type Phosphatase Gene Family AT5G19280 58.475 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00040 K01090 - qsa:O6P43_003406 784.637