Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00039 ATGGCAATTGTAGACAGCATTGTCAGTCTCTTTCTTCTCACTATGCTCATTCTCATCGTCGTCCTTGTCTTCTTTGCCTGTAAACCATGGCGCTTCCTTTTCTCTTCCCGGCCCCGTTCCTCCATCAAGGGTAATGAACTTGAGAGGCCTCTTGTCTTAGATGATGCAAATTTGGTGCATAACCCAAGTAGTGAATTGCCTATAGACTATGATCTTGAGGGTGCATCCATCCCCAATGAAGGTTATTTTCGCCCACCGCGACCCCCTGGACTTATTTATAAGCAAAGGCTTTCTGCTGCTTCTTGCCACATGCCTCAAGATGTAGTTTCTGTTCCCTCAGAAGACGTTGCTGTTGGCCAGACACTTAAACTGTCCCCAGCCCAGTTTGCAGAGTTTCAGAAGCATAATAAAAATTTTGAAACTGACAGACTGCAAGACTTTGTACAGAGAGATATAATAGATCAAAGAAGTTGCCTCACTCTAGAGGTGATCACTGGTCCTTCTCGTGGACTCCGTTGTTCTGTACAATCAGCAATTCCATCCAAGCTACCGCTGACCCTGGGAAGAGTTTCCCCAAGTGATTTGTTAATAAAGGATTCAGAAGTGTCAGGAAAGCATGCCCTAATAAACTGGAATTTGGAGAAAATGAAATGGGAGTTGGTAGATATGGGTAGCCTTAATGGGACACTTTTGAATTCTCAACCAATCAAACATTTAGACCCCGGAAGCAGGCAATGGAGTAATCCAATTGAGCTTGCTAATGGAGATATCATAACACTGGGAATGACATCAAAAGTAATTGTTCATATTACTTCTCAAAATAAGATTCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCCATGTCTAGGCGTCGAGGAGGGAAAAAGCTGGCCATGGAAGATGTTTGCTATTATCAATGGCCTTTACTTGGGTTAGATAAGGTTCTGGATTTATACACAGTGCTTGTTCTGTCAAGCTTGCAGTTTGGTCTGTTTGGCGTTTGTGATGGGCATGGTGGAGATGGGGCTGCCAGATCTGCTAGCAAACTTTTCCCTGAGATAGTTGCAAATATATTATCAGATTCACTAAAAAGAGAGAAGGTTGTATCACTCTGTGATGCTTCAGATGTTCTAAGGGATGCATTTTCTCAAACAGAAGCTTGCATGAATCACTATTATGAGGGATGTACAGCTACAGTGCTTCTAGTTTGGGGTGATGGCAATGAAAATTTCTTTGCACAATGTGCAAATGTTGGAGACTCTGCCTGCGTTATGAATGTTGATGATAAAGAAATTAGGATGACGGAAGATCATAAGGTGACAAGTTGTTCTGAAAGGCTACGAATTGAAGAGACAGGCGAACCTCTGAGAGATGGGGAAACACGTCTATATGGTATAAATCTTGCGAGGATGCTTGGAGACAAATTTCTTAAACAGCAGGATTCTCGTTTCAGTTCAGAGCCTTATATAAGTCAAGTTGTGCACATTGATCAGGCAAGCAGGGCTTTTGCCATACTAGCAAGTGATGGGCTATGGGATGTCATGAGCGGGAAGAAAGCAATTCAGCTAGTGCTTCAGATGAGAGACAAGTACTCGACAGATGATGATAATTCAGCGGAAAAGATTGCAAATTTGCTGTTGAGTGAGGCTAGAACACTCAGAACAAAGGATAACACCTCAGAAATGGTATATGTGGTGCTTTCCTCAGATCGCCTTCCTTTTTCTGTGTCGTCTCATGCTCAATCTGCGGAATCAATAATTCTTCGCCAATTACTTCTCCTGCCCTCTTTTCTTTTTCTCCTCCTCGTCCTTCGCCATTTCAGATGTTTGACATTTCGGTTTTAA 1848 0.4269 MAIVDSIVSLFLLTMLILIVVLVFFACKPWRFLFSSRPRSSIKGNELERPLVLDDANLVHNPSSELPIDYDLEGASIPNEGYFRPPRPPGLIYKQRLSAASCHMPQDVVSVPSEDVAVGQTLKLSPAQFAEFQKHNKNFETDRLQDFVQRDIIDQRSCLTLEVITGPSRGLRCSVQSAIPSKLPLTLGRVSPSDLLIKDSEVSGKHALINWNLEKMKWELVDMGSLNGTLLNSQPIKHLDPGSRQWSNPIELANGDIITLGMTSKVIVHITSQNKIHIPFGVGMASDPMSRRRGGKKLAMEDVCYYQWPLLGLDKVLDLYTVLVLSSLQFGLFGVCDGHGGDGAARSASKLFPEIVANILSDSLKREKVVSLCDASDVLRDAFSQTEACMNHYYEGCTATVLLVWGDGNENFFAQCANVGDSACVMNVDDKEIRMTEDHKVTSCSERLRIEETGEPLRDGETRLYGINLARMLGDKFLKQQDSRFSSEPYISQVVHIDQASRAFAILASDGLWDVMSGKKAIQLVLQMRDKYSTDDDNSAEKIANLLLSEARTLRTKDNTSEMVYVVLSSDRLPFSVSSHAQSAESIILRQLLLLPSFLFLLLVLRHFRCLTFRF 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00039 615 Gene3D - 290 572 IPR036457 -
Pral5300g00039 615 CDD PP2Cc 293 564 IPR001932 -
Pral5300g00039 615 Pfam FHA domain 186 261 IPR000253 GO:0005515
Pral5300g00039 615 Gene3D - 153 289 - -
Pral5300g00039 615 ProSitePatterns PPM-type phosphatase domain signature. 332 340 IPR000222 GO:0043169
Pral5300g00039 615 SUPERFAMILY SMAD/FHA domain 157 267 IPR008984 GO:0005515
Pral5300g00039 615 CDD FHA_PP2C70-like 159 269 - -
Pral5300g00039 615 PANTHER PROTEIN PHOSPHATASE 2C 277 564 IPR015655 GO:0004722|GO:0006470
Pral5300g00039 615 ProSiteProfiles Forkhead-associated (FHA) domain profile. 185 236 IPR000253 GO:0005515
Pral5300g00039 615 FunFam Protein phosphatase 2C 70 289 573 - -
Pral5300g00039 615 ProSiteProfiles PPM-type phosphatase domain profile. 281 567 IPR001932 -
Pral5300g00039 615 FunFam Protein phosphatase 2C 70 154 288 - -
Pral5300g00039 615 SUPERFAMILY PP2C-like 295 564 IPR036457 -
Pral5300g00039 615 SMART FHA_2 184 236 IPR000253 GO:0005515
Pral5300g00039 615 SMART PP2C_4 275 565 IPR001932 -
Pral5300g00039 615 Pfam Protein phosphatase 2C 328 560 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00039 Pral-Chr5300 244472 251250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00039 1 566 PP2C-type Phosphatase Gene Family AT5G19280 57.475 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00039 K01090 - qsa:O6P43_003406 783.867