Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00036 ATGATGCGGTTGCGTCGTCCTATGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTAAGGAAGAAAAGGGACGCTGAGAGATTGTCAAAATTGGAAGAGGAGGAGAAGAATCAAATAGAGACCAGAAAAAGAAAATTTTTCGCGGAAATACTTAATGCTGTCCGTGAGTTCCAATTACAGATTCAAGCTTCTTTGAAACGAAGAAAACAAAGAAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACAAGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAGTTGCTTGTAAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAACAAATGGATGGCATCGAACCTTTGGAAGACTCAGAAGCTGAACTACCAGAGTCAGATGGTTCAAAAAATGGAATATCCAAGGAATCACCTGCTGAGGAATATGCTGACATGGTAGATTCTGATCACAATGGTGACACTAGTGATTTACTTGAAGGTCAACGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCTTCTACTCTTCAAGGTGGAGAGTTAAGACCATATCAGTTAGAAGGGCTTCAGTGGATGCTTTCCTTGTTCAATAACAACCTAAATGGAATTTTGGCGGATGAAATGGGGCTGGGGAAGACAATACAAACAATTTCTTTGATAGCTTATCTTATGGAGAACAAGGGCGTGACTGGTCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAGTGAATTCTCGACATGGGTTCCAAGCATTACAACTGTTCTTTATGATGGACGGCTGGATGAGCGAAAAGCAATGAAGGAGGAGTTATCAGGAGAGGGGAAGTTTAATGTTCTGATAACACACTATGACCTTATAATGAGAGATAAGGCGTTTCTCAAGAAAATTAACTGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACTCTTGATTCTGGCTATAACATCCAACGTAGGCTACTGCTGACTGGCACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTTCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAGAATTTTGAGGACTGGTTTAATGCCCCCTTTGCGGATCGAGTTGATGTCTCTTTAACAGACGAAGAACAGCTATTGATCATTCGTCGTCTTCATCAAGTAATAAGACCCTTCATATTAAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCAGGGAAATCTCAGGTCATCCTCAAATGTGATATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTGGACAATGGCACTGGGAAATCCAAGAGTCTACAGAATTTAACAATGCAACTCAGGAAGTGTTGTAATCATCCCTACCTCTTTGTGGGGGAACATAATATGTGGAACAAAGATGAGATTGTCCGAGCATCAGGGAAGTTTGAACTACTTGACCGTTTGCTACCAAAACTTCGTAGAACTGGGCACAGAGTCCTTATGTTCTCACAGATGACTCGTCTCATGGACATTCTTGAGATTTATCTGCGGCTTCATGATTTCAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGGACTCTACTGCGACAGTTCAATGCTCCTGACTCTCCATACTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGCCTTGGTCTAAACTTGCAAACGGCAGATACTGTTATAATTTTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCCGAGGATCGAGCTCATCGCATTGGACAAAAAAAAGAAGTTCGGGTTTTCGTTTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCAGGGCTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGCAGAGGCACAAGCTCACTTGGGACTGATGTACCAAGTGAGAGAGAAATCAACCGTCTTGCAGCTCGAACAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAAGAGAGAAGGCAAAAGGAGAACTACAGATCTCGTCTAATGGAAGAACATGAAGTGCCAGATTGGGTATACTCTGCAGCAGCTAACAAGGATGACAAGGTCAAAGCTTTTGATTTTGGCAGTGTTACAGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCTGATACATTAAGTGATCTACAGTGGATGAAAGCTGTGGAGAATGGCGAAGACGTGTCAAGGCTTTCAGTTAAAGGGAGAAGAAGAGACCACCTGCCATTGGACAGCAACACAATTTCTGGTGATAATGTCGGGGCGGAAGAAAGTTTTTCTGAATTACAAAATGAAAGCTTCTCCATGGCGAAAGAGAGATCAAATGAAGGCTCTTTCCATGTGACCAATCCGGGTCCTGCCCCAAAAAGACTCAGGCAGGAAGGAATGAACACTCAGAAACATGAATACGAGGGCGTCAGAGGAAGTGGTTTGATTGAGCATGTGTTTTCCTGGAATACCCATAGAAAGAAAAGATCAAGCAGTCTTACTCAGAGCTCGGCGTTATCTGATTCTAGGGGGCAGAGTTCTAATGGAAGATCGAATTGGAGCTGA 2805 0.4221 MMRLRRPMYGVGDPFAMDADDQLRKKRDAERLSKLEEEEKNQIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQMDGIEPLEDSEAELPESDGSKNGISKESPAEEYADMVDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSTLQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWISEFSTWVPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKINWYYLIVDEGHRLKNHECALARTLDSGYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGEHNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLMFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARTDEEFWLFERMDEERRQKENYRSRLMEEHEVPDWVYSAAANKDDKVKAFDFGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSRLSVKGRRRDHLPLDSNTISGDNVGAEESFSELQNESFSMAKERSNEGSFHVTNPGPAPKRLRQEGMNTQKHEYEGVRGSGLIEHVFSWNTHRKKRSSSLTQSSALSDSRGQSSNGRSNWS 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00036 934 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 538 705 IPR001650 -
Pral5300g00036 934 MobiDBLite consensus disorder prediction 904 934 - -
Pral5300g00036 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 450 IPR027417 -
Pral5300g00036 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 702 IPR027417 -
Pral5300g00036 934 Pfam Helicase conserved C-terminal domain 535 648 IPR001650 -
Pral5300g00036 934 FunFam Chromatin structure-remodeling complex protein SYD 216 459 - -
Pral5300g00036 934 Pfam Snf2-ATP coupling, chromatin remodelling complex 737 803 IPR029295 GO:0042393
Pral5300g00036 934 SMART SnAC_2 741 803 IPR029295 GO:0042393
Pral5300g00036 934 Coils Coil 19 49 - -
Pral5300g00036 934 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 237 403 IPR014001 -
Pral5300g00036 934 SMART ultradead3 221 414 IPR014001 -
Pral5300g00036 934 FunFam Probable ATP-dependent DNA helicase CHR12 456 754 - -
Pral5300g00036 934 Gene3D - 456 756 IPR027417 -
Pral5300g00036 934 Coils Coil 739 759 - -
Pral5300g00036 934 CDD SF2_C_SNF 526 659 - -
Pral5300g00036 934 SMART helicmild6 564 648 IPR001650 -
Pral5300g00036 934 PANTHER SNF2/RAD54 HELICASE FAMILY 21 845 - -
Pral5300g00036 934 Gene3D - 195 449 IPR038718 -
Pral5300g00036 934 MobiDBLite consensus disorder prediction 906 934 - -
Pral5300g00036 934 MobiDBLite consensus disorder prediction 1 23 - -
Pral5300g00036 934 Pfam SNF2-related domain 228 516 IPR000330 GO:0005524|GO:0140658
Pral5300g00036 934 MobiDBLite consensus disorder prediction 855 876 - -
Pral5300g00036 934 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00036 Pral-Chr5300 227413 234300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00036 207 675 RAD5 or RAD16-like Gene Family AT1G02670 26.335 3.09e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5300g00036 SNF2_N 1.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00036 - - pcin:129308606 1755.73