Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00035 ATGGCTCAGCTGCAGAGCCAACAGCAGCAGCAGCCACCCATTGATCATGCCCAGAAGACCAAGACCCTCATTTGTGCTCTGAACCTTGTCTCCCGTAACCTCCCTCTGCCTCCTGATCTTTTCAACACCGTTTCTTCCATCTATCACGGCGCCGAAGATGCTTCTAGTGATGACCATGAATGCGAGGTCCCTGATGGAAGTGGGGGTGGAGCCGGATCTGAGGAGAAACAGGGGGATGCCCATGCTGACAAGGTTTTGGATAATACAGGAAATTCTAGAGAAGATTTGTTGACGGATCTTGAAGATGCACTATTGAAACAACGACCAAGCTGTGTGTCAGGTTACAAATTGAAGGAAGAAAGGGAAAGCCGTTATAAAAGTCAGATTCAGCATCGGTTAAATGAACTTGAAGGATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTACTTGAACTGTATGGACTGAAGCTAGGAGAGTTGCAGAAGAAGGTTCGATCTGATGTGAGTGCTGAATACTGGCTCAATGTTAAATGTGCACATCCTGGCAGGCAGTTGTTTGATTGGGGAATGATGCGGTTGCGTCGTCCTATGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTAAGGAAGAAAAGGGACGCTGAGAGATTGTCAAAATTGGAAGAGGAGGAGAAGAATCAAATAGAGACCAGAAAAAGAAAATTTTTCGCGGAAATACTTAATGCTGTCCGTGAGTTCCAATTACAGATTCAAGCTTCTTTGAAACGAAGAAAACAAAGAAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACAAGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAGTTGCTTGTAAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAACAAATGGATGGCATCGAACCTTTGGAAGACTCAGAAGCTGAACTACCAGAGTCAGATGGTTCAAAAAATGGAATATCCAAGGAATCACCTGCTGAGGAATATGCTGACATGGTAGATTCTGATCACAATGGTGACACTAGTGATTTACTTGAAGGTCAACGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCTTCTACTCTTCAAGGTGGAGAGTTAAGACCATATCAGTTAGAAGGGCTTCAGTGGATGCTTTCCTTGTTCAATAACAACCTAAATGGAATTTTGGCGGATGAAATGGGGCTGGGGAAGACAATACAAACAATTTCTTTGATAGCTTATCTTATGGAGAACAAGGGCGTGACTGGTCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAGTGAATTCTCGACATGGGTTCCAAGCATTACAACTGTTCTTTATGATGGACGGCTGGATGAGCGAAAAGCAATGAAGGAGGAGTTATCAGGAGAGGGGAAGTTTAATGTTCTGATAACACACTATGACCTTATAATGAGAGATAAGGCGTTTCTCAAGAAAATTAACTGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACTCTTGATTCTGGCTATAACATCCAACGTAGGCTACTGCTGACTGGCACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTTCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAGAATTTTGAGGACTGGTTTAATGCCCCCTTTGCGGATCGAGTTGATGTCTCTTTAACAGACGAAGAACAGCTATTGATCATTCGTCGTCTTCATCAAGTAATAAGACCCTTCATATTAAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCAGGGAAATCTCAGGTCATCCTCAAATGTGATATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTGGACAATGGCACTGGGAAATCCAAGAGTCTACAGAATTTAACAATGCAACTCAGGAAGTGTTGTAATCATCCCTACCTCTTTGTGGGGGAACATAATATGTGGAACAAAGATGAGATTGTCCGAGCATCAGGGAAGTTTGAACTACTTGACCGTTTGCTACCAAAACTTCGTAGAACTGGGCACAGAGTCCTTATGTTCTCACAGATGACTCGTCTCATGGACATTCTTGAGATTTATCTGCGGCTTCATGATTTCAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGGACTCTACTGCGACAGTTCAATGCTCCTGACTCTCCATACTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGCCTTGGTCTAAACTTGCAAACGGCAGATACTGTTATAATTTTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCCGAGGATCGAGCTCATCGCATTGGACAAAAAAAAGAAGTTCGGGTTTTCGTTTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCAGGGCTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGCAGAGGCACAAGCTCACTTGGGACTGATGTACCAAGTGAGAGAGAAATCAACCGTCTTGCAGCTCGAACAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAAGAGAGAAGGCAAAAGGAGAACTACAGATCTCGTCTAATGGAAGAACATGAAGTGCCAGATTGGGTATACTCTGCAGCAGCTAACAAGGATGACAAGGTCAAAGCTTTTGATTTTGGCAGTGTTACAGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCTGATACATTAAGTGATCTACAGTGGATGAAAGCTGTGGAGAATGGCGAAGACGTGTCAAGGCTTTCAGTTAAAGGGAGAAGAAGAGACCACCTGCCATTGGACAGCAACACAATTTCTGGTGATAATGTCGGGGCGGAAGAAAGTTTTTCTGAATTACAAAATGAAAGCTTCTCCATGGCGAAAGAGAGATCAAATGAAGGCTCTTTCCATGTGACCAATCCGGGTCCTGCCCCAAAAAGACTCAGGCAGGAAGGAATGAACACTCAGAAACATGAATACGAGGGCGTCAGAGGAAGTGGTTTGATTGAGCATGTGTTTTCCTGGAATACCCATAGAAAGAAAAGATCAAGCAGTCTTACTCAGAGCTCGGCGTTATCTGATTCTAGGGGGCAGAGTTCTAATGGAAGATCGAATTGGAGCTGA 3381 0.4321 MAQLQSQQQQQPPIDHAQKTKTLICALNLVSRNLPLPPDLFNTVSSIYHGAEDASSDDHECEVPDGSGGGAGSEEKQGDAHADKVLDNTGNSREDLLTDLEDALLKQRPSCVSGYKLKEERESRYKSQIQHRLNELEGLPSSRGEDLQTKCLLELYGLKLGELQKKVRSDVSAEYWLNVKCAHPGRQLFDWGMMRLRRPMYGVGDPFAMDADDQLRKKRDAERLSKLEEEEKNQIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQMDGIEPLEDSEAELPESDGSKNGISKESPAEEYADMVDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSTLQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWISEFSTWVPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKINWYYLIVDEGHRLKNHECALARTLDSGYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGEHNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLMFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARTDEEFWLFERMDEERRQKENYRSRLMEEHEVPDWVYSAAANKDDKVKAFDFGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSRLSVKGRRRDHLPLDSNTISGDNVGAEESFSELQNESFSMAKERSNEGSFHVTNPGPAPKRLRQEGMNTQKHEYEGVRGSGLIEHVFSWNTHRKKRSSSLTQSSALSDSRGQSSNGRSNWS 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00035 1126 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 429 595 IPR014001 -
Pral5300g00035 1126 MobiDBLite consensus disorder prediction 1098 1126 - -
Pral5300g00035 1126 SMART helicmild6 756 840 IPR001650 -
Pral5300g00035 1126 FunFam Probable ATP-dependent DNA helicase CHR12 648 946 - -
Pral5300g00035 1126 MobiDBLite consensus disorder prediction 347 368 - -
Pral5300g00035 1126 SMART SnAC_2 933 995 IPR029295 GO:0042393
Pral5300g00035 1126 Pfam SNF2-related domain 420 708 IPR000330 GO:0005524|GO:0140658
Pral5300g00035 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 894 IPR027417 -
Pral5300g00035 1126 PANTHER SNF2/RAD54 HELICASE FAMILY 157 1037 - -
Pral5300g00035 1126 MobiDBLite consensus disorder prediction 1047 1068 - -
Pral5300g00035 1126 Coils Coil 211 241 - -
Pral5300g00035 1126 MobiDBLite consensus disorder prediction 51 90 - -
Pral5300g00035 1126 Coils Coil 931 951 - -
Pral5300g00035 1126 CDD SF2_C_SNF 718 851 - -
Pral5300g00035 1126 FunFam Chromatin structure-remodeling complex protein SYD 408 651 - -
Pral5300g00035 1126 Pfam Helicase conserved C-terminal domain 727 840 IPR001650 -
Pral5300g00035 1126 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 897 IPR001650 -
Pral5300g00035 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 642 IPR027417 -
Pral5300g00035 1126 SMART ultradead3 413 606 IPR014001 -
Pral5300g00035 1126 Gene3D - 387 641 IPR038718 -
Pral5300g00035 1126 MobiDBLite consensus disorder prediction 1096 1126 - -
Pral5300g00035 1126 Pfam Snf2-ATP coupling, chromatin remodelling complex 929 995 IPR029295 GO:0042393
Pral5300g00035 1126 Gene3D - 648 947 IPR027417 -
Pral5300g00035 1126 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00035 Pral-Chr5300 227413 235945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00035 399 867 RAD5 or RAD16-like Gene Family AT1G02670 27.353 9.82e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5300g00035 SNF2_N 1.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00035 - - pcin:129308606 2084.3