Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00025 ATGTTGTCCAATCATTTCCAAAACGGCATCGAAACGGCGAAGCTTGTTTGGTCGCGGATTCCAAACTCGGAAGATTTGCAGTACCTGGATGATGCTGTTGGCCACTTGAAGAAGAGCGATGGAAGTGGCGTTGAGAGCCTTGACTACGAAGTCATAGAGAACTATGCTTACCGAGAAGAACAGGCGCAAAGAGGGAAGCTATACGTGAGCTACTTACTGGTCGTGAAATGGTTCTTTGCCTTGCTCATTGGCATCGGTACTGGACTTGCTGCCATTTTCATTAATATTTCTGTTGAGAACTTTGCTGGTTGGAAGTACTCATTGACATTTAATATAATCCAAAAATCATACGTGGCTGGTTTCATTGTATATGTCCTTATCAACTTGGTTTTGGTCTACTCCTCTGTATATATTGTCACACAATTTTCACCAGCGGCAGCTGGATCTGGTATTCCTGAAATCAAGGGCTACTTGAATGGAATTGATGTTCATGGCATCCTTCTTTTCAGAACCTTGATTGGAAAGATTTTTGGTAGCATCGGCTCAGTGGCAGGTGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTTCATACTGGTGCATGTATTGCTTCTTTGCTTGGACAAGGTGGATCCACTAAGTATCATCTAAGTTCGAGGTGGTTTCAAGTATTCAAAAGTGATCGAGACCGCCGTGATCTTGTAACCTGTGGGTGTGCAGCGGGAGTTGCTGCTGCATTTAGAGCTCCTGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTTACATCATGGTGGAGGAGTCAATTGATGTGGCGGGTCTTCTTCACATCAGCTGTTGTGGCTGTTGTGGTGCGTACTGCAATGGGGTGGTGTAAGAATGAGACGTGTGGACATTTTGGCTCGGGTGGATTTATAATATGGGATGTATCAGATGGCCAAGAGGATTATTCCTTCATGGAGTTATTACCAATGGCTATTATTGGGGTTATTGGAGGCTTGCTAGGAGCCTTGTTTAACCAGCTTACTCTTTATATTACTTCTTGGCGCCGCAATTATCTGCACAAAAAAGGGATCCGTGTCAAGATTGTTGAAGCATGCCTTGTCTCACTGTTGACGTCAGTTATTTCATTTTGCTTACCACTTCTCAGAAAATGTAGTCCTTGCCCTGAATCTGATCCTGATTGTCCTCGGCCTCCTGGAATGTATGGGAATTATGTCAATTTCTTTTGTAGCAAGGAAAAGGAATACAATGATCTTGCTACTATTTTCTTTAACACGCAGGATGATGCCATAAGGAACTTGTTCAGCGCAAAAACAATACATGAGTTCAGCGCCCAAAGTTTATTAACCTTTTTGGTTATGTTTTATACTTTAGCCGTGGTTACATTTGGTACTGCTGTTCCAGCTGGTCAGTTTGTTCCTGGAATCATGATAGGATCAACATATGGGCGCCTAGTTGGCATGTTTGTTGTAAGATATTACAGGAAGCCCAACATTGAAGAGGGAACGTATGCTCTGCTGGGAGCCGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTCTGTGTTATTATGGTTGAAATCACAAATAACTTAAAATTTTTACCCCTTATTATGCTTGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAATGAGGGTCTCTATGAAGAGCAGGCACGACTGAGGGGTATTCCATTACTGGAACCAAGGCCCAAATATGTGATGCGGAATATGACAGCAAGGGAGGCCTGCGGAAGTGGAATGGTGATATCCTTCCCCCGTGTTGCTAAGGTTGCAGATGTAGTTTCTATCCTTCGGAGCAACAAACACAATGGTTTTCCCGTGATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGATTAGTACTTCGAAGTCATTTATTGGTAATTCTGCAATCAAAGGTCGATTTCCAGCATAGTCCTTTACCCTCTGATGCCAGAGGTGGAGTGAGGCCAATAAGGCATGACTTTGATGAATTTGCGAAGCCTGTTTCTAGTAAGGGAATATCTATAGACGATATACTTTTAAGTTCAGATGACTTGGAAATGTACATAGATCTTGCCCCTTTTTTGAATCCATCACCATATATTGTGCCGGAAGATATGTCCTTGACAAAGGTTTACAATCTTTTCCGCCAATTAGGGTTGAGACATCTATTTGTTGTTCCGCGTCCATCTCGTGTACTTGGCTTGATAACCAGAAAAGACTTGTTGATTGAGGACACTGAAACTGTGAATACAGTGGAGCTCCAGTCAACTAGAGTAAGAATGCAGAATCGCGATAAAAAATTGATGACCAGTAATGCAGATGCTGAGCGGCCTTTGTTGAATGGCCTACTGATTCAGGATCAAATTTCTGGCTAG 2397 0.428 MLSNHFQNGIETAKLVWSRIPNSEDLQYLDDAVGHLKKSDGSGVESLDYEVIENYAYREEQAQRGKLYVSYLLVVKWFFALLIGIGTGLAAIFINISVENFAGWKYSLTFNIIQKSYVAGFIVYVLINLVLVYSSVYIVTQFSPAAAGSGIPEIKGYLNGIDVHGILLFRTLIGKIFGSIGSVAGGLALGKEGPLVHTGACIASLLGQGGSTKYHLSSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKNETCGHFGSGGFIIWDVSDGQEDYSFMELLPMAIIGVIGGLLGALFNQLTLYITSWRRNYLHKKGIRVKIVEACLVSLLTSVISFCLPLLRKCSPCPESDPDCPRPPGMYGNYVNFFCSKEKEYNDLATIFFNTQDDAIRNLFSAKTIHEFSAQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVRYYRKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLEPRPKYVMRNMTAREACGSGMVISFPRVAKVADVVSILRSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDARGGVRPIRHDFDEFAKPVSSKGISIDDILLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDTETVNTVELQSTRVRMQNRDKKLMTSNADAERPLLNGLLIQDQISG 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00025 798 PRINTS Chloride channel signature 501 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5300g00025 798 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5300g00025 798 PRINTS Chloride channel signature 519 538 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5300g00025 798 PRINTS Chloride channel signature 466 486 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5300g00025 798 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5300g00025 798 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5300g00025 798 PRINTS Chloride channel signature 557 571 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5300g00025 798 ProSiteProfiles CBS domain profile. 702 759 IPR000644 -
Pral5300g00025 798 Pfam CBS domain 703 749 IPR000644 -
Pral5300g00025 798 Pfam CBS domain 593 642 IPR000644 -
Pral5300g00025 798 CDD ClC_6_like 45 570 - -
Pral5300g00025 798 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 29 754 - -
Pral5300g00025 798 Pfam Voltage gated chloride channel 134 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5300g00025 798 SUPERFAMILY CBS-domain pair 575 749 IPR046342 -
Pral5300g00025 798 Gene3D - 592 755 IPR046342 -
Pral5300g00025 798 FunFam Chloride channel ClC3 68 385 - -
Pral5300g00025 798 Gene3D Clc chloride channel 69 571 - -
Pral5300g00025 798 FunFam Chloride channel protein 694 785 - -
Pral5300g00025 798 CDD CBS_pair_voltage-gated_CLC_euk_bac 592 749 - -
Pral5300g00025 798 SMART cbs_1 591 643 IPR000644 -
Pral5300g00025 798 SMART cbs_1 705 753 IPR000644 -
Pral5300g00025 798 SUPERFAMILY Clc chloride channel 54 572 IPR014743 -
Pral5300g00025 798 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5300g00025 798 PRINTS Plant CLC chloride channel signature 418 434 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5300g00025 798 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5300g00025 798 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5300g00025 798 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00025 Pral-Chr5300 131572 139964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00025 1 767 Ion Channels AT5G26240 83.398 0.0 1238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00025 K05016 - gmx:100811908 1364.36