Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5299g00005 ATGATGTTTCATCCTGGAGGAATTCCCAAAAATACTTGTAGTCTACTTGCCGTCACATGTGGCAAAGGCGTTGAGCATGAGGTCGACAAGAAACTCACTCAGAATCAGCTCAAATATCCTTTTCCCGAGTTAGCTTCTTCAGGGCGTCTGGAGGTTCAAACTCTAAACAATCCGGAAAAAGAACAGTTTCGAAAAGTTCTCGAGTCTTATCAGCCAAATTTTGTATATTTACAAGGAGAACAGCTTGCAAATGATGAAGTTGGTTCTTTGGTTTGGCAAGGCGAAGAATTGGCCACCCCTGAAGCTATATCAGAGCTCTTTGGTCCCACATTGCCAACAGCTGTATACTTGGAAATCCTGAATGGGGAAAATTTGGCAGAAACTCTTCATCTTAAGGGAGTTGCATATGTGATTTATTGGAAAAATACCTTTTCTTGTTATGCTGCCTGCCATTTTCGTCATGCATTTCTTTCAGTGGTGCGGAGCTCTTCTACGCATACATGGGATGCCTTTCACCTTGCCCGTGCTTCTTTTGAGTTTTATTGTGTTCATAACAATCAAGTCCTTCCTGGTGAGAAACTTGATTCTAGTGACAATAGAGGGCCGCACCTCCTTGGAGATTGTCTTCAAATCAGTATTGACCCTCCTGAGGTGTGTGAAGATGATGAGGAAAGTTCTTCAGGCAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAGCTTGAGATTTCTCATCTGTGGTTCGCCTTCAGTTGTGGATGAGTCACTATTGAGGTCATTGGAGGATGGACTCAAAGCACTCTTAACCATTGAGATACGGGGGAGCAAACTCCATGGCAAGTTTAGTGCTCCTCCACCACCTCTTCAAGCGGCCACTTTTTCTCGAGGAGTTGTGACCATGCGATGTGATATATCAACTTGTAGTTCAGCCCACATCTCACTTTTGGTGTCTGGTAGTGCTCAAACTTGCTTCAATGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCGTGCCCAAATGGCCGAGGGAAACAAACAGCATGTCTCTGAACCTCGTAGATCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCATGAAGCTTCCTCTATGGGCTTCGCAGGTATTGAGACAGCTAGCTCCTGATATTACTTATCGAGGTTTAGTTGCAGTTGGGATTGCTAGCATTCAGGGGTTGCCTATTGCTTCATTCGAGAAAGATGATGCTGAGCGCCTGCTTTTCTTTTATCATAGTCAAGAGAAAGATAGTGATGCGGACAAAGTCATTTTCAGCAACCCCCCTGGATGGTTGAAACCACCCCCTCCTACCAGAAAAAGGTGTGAGCCAAGTCAAGAGGCAAGCCCTGGCCTTCAAGATGGAGCTTTAACCGGGCAGGGTACTATCCAAAAAGTAGACGAAGAGGAAAAGGATACAAAAATGGTGAATGGAATTGGCACATCCTTAACTCCCGCTAGGCAGAGATTAAAAGTGTCTGCAATGAGGCCCATCCCTCATGTTCATCGCCACAGAATGACGCTCTTTTCTGGACCTTCTGAGACAGATGGCTATGATGGTGCTCAAGTTGAAGCTAGTTTACCACTTGTTGTTCCTGCAAAGCGCAGTACTACTGGTTCAAGTTCTGCAACACAGAGAAGGTCATTTTCAGGCTCAGCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACATGGTTGTGGCCGAGGCCAGATCCAAACTTGCTCTGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGGGGACATAGTCGATTAATTCCTCAAGGAGGGCTTGCTGAGTTTCCTGATGCAATTCTCAATGGGAAACGGCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGTAATGGCATCAATTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACACTCAAAAGGCATTATGAAACTTACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGCATATGTGGCGAGTGGGCCCACTTCGGCTGTGACAGACGGCAAGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGACTGGAATATATTTGTCCTCATTGTAGCGTAACAAATTTCAAGAAGAAACCCTCAGGTGTTGCCAATGGGTTTTCTCAGGGGTCAACGGCATCAAAACCCTTTTGA 2346 0.4429 MMFHPGGIPKNTCSLLAVTCGKGVEHEVDKKLTQNQLKYPFPELASSGRLEVQTLNNPEKEQFRKVLESYQPNFVYLQGEQLANDEVGSLVWQGEELATPEAISELFGPTLPTAVYLEILNGENLAETLHLKGVAYVIYWKNTFSCYAACHFRHAFLSVVRSSSTHTWDAFHLARASFEFYCVHNNQVLPGEKLDSSDNRGPHLLGDCLQISIDPPEVCEDDEESSSGSLPAIKIHDDEVSLRFLICGSPSVVDESLLRSLEDGLKALLTIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIEKSQLVRAQMAEGNKQHVSEPRRSASIACGAAVFEVCMKLPLWASQVLRQLAPDITYRGLVAVGIASIQGLPIASFEKDDAERLLFFYHSQEKDSDADKVIFSNPPGWLKPPPPTRKRCEPSQEASPGLQDGALTGQGTIQKVDEEEKDTKMVNGIGTSLTPARQRLKVSAMRPIPHVHRHRMTLFSGPSETDGYDGAQVEASLPLVVPAKRSTTGSSSATQRRSFSGSAQSKQIISLNPLPLKKHGCGRGQIQTCSEEEFLKDVMEFLMLRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKPSGVANGFSQGSTASKPF 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5299g00005 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Pral5299g00005 781 MobiDBLite consensus disorder prediction 442 474 - -
Pral5299g00005 781 CDD PHD_ARID4_like 704 755 - -
Pral5299g00005 781 CDD ARID 596 694 - -
Pral5299g00005 781 SMART ARID_2 591 694 - -
Pral5299g00005 781 SUPERFAMILY FYVE/PHD zinc finger 697 761 IPR011011 -
Pral5299g00005 781 MobiDBLite consensus disorder prediction 550 571 - -
Pral5299g00005 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 777 IPR042293 -
Pral5299g00005 781 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Pral5299g00005 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 761 IPR013083 -
Pral5299g00005 781 Gene3D - 590 697 IPR036431 GO:0003677
Pral5299g00005 781 SMART bright_3 595 699 IPR001606 GO:0003677
Pral5299g00005 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5299g00005 Pral-Chr5299 32529 41998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5299g00005 2 770 ARID Transcription Factor Family AT3G43240 60.641 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pral5299g00005 ARID 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5299g00005 - - gmx:100816540 1310.82