Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5299g00003 ATGGCTTCGTCTTCTTCACCTAAAACAACCAGAAAGCCTGGGAAAGGTAGGAGCAAGATCGAGATTAAGAAAGTGGAACAAACCAGCAAGCGTTTCGTCACATTCTCAAAACGCAAATTAGGCCTCTTCCGCAAAGCCGCCGAACTATCCCTTCTCTGCGATTCTCAAATCGCCGTCGTCGTCTTCTCCCAATTCGGCAAGGTCTATTCCTCCGGCTACCCCGACCCTGACGCCGTCATCCGCCGCTACCTCTCCTGCGCATCCTCCTCGATGTCGGACTCTACGTCGGCTCATGATCCGGAAAGAGAATGTTAG 315 0.5238 MASSSSPKTTRKPGKGRSKIEIKKVEQTSKRFVTFSKRKLGLFRKAAELSLLCDSQIAVVVFSQFGKVYSSGYPDPDAVIRRYLSCASSSMSDSTSAHDPEREC 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5299g00003 104 MobiDBLite consensus disorder prediction 1 20 - -
Pral5299g00003 104 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Pral5299g00003 104 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Pral5299g00003 104 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Pral5299g00003 104 PANTHER MADS BOX PROTEIN 17 91 - -
Pral5299g00003 104 Gene3D - 27 102 IPR036879 GO:0003677|GO:0046983
Pral5299g00003 104 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Pral5299g00003 104 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 70 IPR002100 GO:0003677|GO:0046983
Pral5299g00003 104 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Pral5299g00003 104 SUPERFAMILY SRF-like 16 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5299g00003 Pral-Chr5299 18632 18946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5299g00003 16 104 MADS-box Gene Family AT2G45650 40.449 2.65e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral5299g00003 SRF-TF 4.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5299g00003 - K12412 pcin:129319416 141.739