Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5299g00002 ATGTGTGGAGGTGCTATCATCTCCGACTTCATTCAGACGCCGGGGGCCAGGTCTCGCCGGCTCACCGCTGATCTCCTCTGGCCGGATTTGAAGAAATCCAGTGGGGGGAAGCGATTCTCGAAGCCCACTAGGTCTGCGTTCGGGGATTCGGACGATGATTTCGAAGCTGATTTTAGGGAATTCAAGGACGAGTCCGATATCGATGAGGTGGATGTGGATGATGATTTTCTATTCGATTTCAATACCTTAGGTTTCTCTGCTGCCAAACCCCCGAAGCCTTCCAGATCCCGGTCTCGTGGATCTGGTGCTGTAAAATCTGTGGAATTCAATGGAAAAGCTAACAAGTCTGAGAAAAGAAAGAGGAAGAATCTGTATAGGGGAATCCGTCAGCGCCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCGAGGAAAGGAGTCCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCTAGAGCCTATGATGCTGAAGCACGGAGGATTCGTGGTAAGAAAGCCAAGGTGAACTTTCCTGATGAGGCCTCAAGCTCTCCCCCAAAACATTACAATGTAAAACACTCTGTCCAGCCCATTATGAACCAGAAATTCAATTTTGAAAACAATCCAAAGGACTATGTCTGTCCTCTGGGTCTGATGGAGCAGAAACCACTGGTTAATCAGTATGCTAACATGGGAGGTTTACCCAGCAGTGCAGATGGGCTCACATCTTTCACGCCATCAGATGATGTTAATATGCCTGTTTGTTTCAGTTCGGATCAAGCAAGCAATTCGTTTGATTATTCTAGTTTTGGTTGGGGTGAACGGGGCCCAAAGACTCCCGACATCTCGTCAATGCTTTCTGCTTCTATAGAAGATGAATTTCAAGCTGTTGACGACGCCAACAAGAATGATCACATTCCTAACTCTCAGAATGTGTTGCCTGCGGAAAATGATTCTGCAAAGACACTGTCTGAGGAACTTGCAGATATTGAATCCCAGTTGCAGTTCTTTAAGACACCTTACCTTGAAGGGAGCTGGGACGATGCTTCATTAGAAACCTTGCTTGGTGAAAACACAACTCAGGATAGTGAAAACCCAATGGACTTTTGGAGTTTTGGTGATGATCTTCCTTCCATGGCCGGGGGAGTTTTCTGA 1164 0.4725 MCGGAIISDFIQTPGARSRRLTADLLWPDLKKSSGGKRFSKPTRSAFGDSDDDFEADFREFKDESDIDEVDVDDDFLFDFNTLGFSAAKPPKPSRSRSRGSGAVKSVEFNGKANKSEKRKRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEASSSPPKHYNVKHSVQPIMNQKFNFENNPKDYVCPLGLMEQKPLVNQYANMGGLPSSADGLTSFTPSDDVNMPVCFSSDQASNSFDYSSFGWGERGPKTPDISSMLSASIEDEFQAVDDANKNDHIPNSQNVLPAENDSAKTLSEELADIESQLQFFKTPYLEGSWDDASLETLLGENTTQDSENPMDFWSFGDDLPSMAGGVF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5299g00002 387 CDD AP2 125 182 IPR001471 GO:0003700|GO:0006355
Pral5299g00002 387 Gene3D AP2/ERF domain 124 182 IPR036955 GO:0003700|GO:0006355
Pral5299g00002 387 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Pral5299g00002 387 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Pral5299g00002 387 PANTHER DNA-BINDING DOMAIN 98 286 IPR044808 GO:0003700|GO:0009873
Pral5299g00002 387 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Pral5299g00002 387 MobiDBLite consensus disorder prediction 88 124 - -
Pral5299g00002 387 FunFam Ethylene-responsive transcription factor 2 123 182 - -
Pral5299g00002 387 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Pral5299g00002 387 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Pral5299g00002 387 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5299g00002 Pral-Chr5299 9622 12958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5299g00002 1 387 AP2-EREBP Transcription Factor Family AT1G53910 45.545 6.22e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5299g00002 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5299g00002 K09286 - cave:132186622 399.823