Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5298g00006 ATGAGCTATTTCTTTGGCGCTTCCCTCCACATCCAGAACTTGATTGAAGAGGAGGACATCTGCAAATTAAGCTCGAAACTGACATGTTTTAGACCTTGTGAGCTAATTAAGCTGACATCCACCAGGCTGAAGCTAGAAACTGCTGTCACAACCATTGCTTCAATGCTCCAAAAAGCTTTATTGATCCTATTGGGAGTATCAATTTCCAAAACTATCAGACTCATCTCTCGTTCGCGTAATTGTAACCAACTTGTTGGTATTGATGCTTGCTCTGAAGACAATATTATTTTAACTCAAACGGTTTCTCCTCCTGCTACCAAGTATGATGTGTTCCTTAGCTTTAGAGGAGAAGACACTCGCCACAATTTTGCAAGTTCTCTTTACAGAAGGCTACAAAATGCGGGCATTCACACTTTTATGGATCATGAACTTCGAAAAGGAGAACCAATCTCACCGGTTCTTCTAAGAACAATAGAGGAATCAAAAATATCTGTGATTATTTTCTCTTATCATTATGCTTCTTCAACTTGGTGTCTGGATGAGCTTGTTCATATATTAGAATGCAAGCGTAAATTTGGAAGGATTGCTATACCTATTTTCTATAATGTAGATCCTTCAGACGTGCGCAAACAAAACGGGAATTTTGGAAAAGGATTTAATGTATTGAAGCAAAGATTTAAAGACAACCAACAAAAATTACAAAAGTGGAGTAATGCTTTATTCCAATCCACAAGTCTCTCTGGATGGGATCCCCACAGCACGAGACCTGAATTCAAACTTATTGAAGAGATTGTCAAGGATATTTTGAGGAAGTTGAGCTATGCGTCATCATCTCATCTTGAAGGACTCATTGGTATTGCTCGACATATTGAAAACATTCAAAGGCTTCTGACTGAGGCTCGCATTGTGGGAATATGGGGTATGGGTGGTGCTGGTAAGACCACACTTGCTAAAGCTATATTTCAAGAGTTGAAAGCTCAATTTGATGCTTTCTCCTTTATTGAAAATGTCAAAAAGCAATTAAAAAGAATTAGTTTGGATGAGCTGCAGAAGAATTACCTTAAAGAATTATTAAAAGATGAGGATATTAGCATCTATGACATAAAATCCACTTTTGTGAAAAATAGGCTTCAGAGAAAAAAAATTCTTCTTATACTTGATGATGTAGACAATTCAACAGTAGCGGCAGATTTAACCAGGGTACTTGATTGGTTTGGAGAAGGAAGTAGAATTATTATCACATCAAGGGACATGCAAGTGCTGAAGAATGCTTCTGCGACATTCTCAACATATCATGTTCCGGATTTGGATTTTGAAGATGCTTTTCATCTCTTCAGTTTGAAAGCATTCAAGCGACATGAGCCATCTAAAGGTTACATGGAGTTATCAAAATCAGTAGTGAAATATTGTCACGGAAACCCGTTAGCCCTAGTAGTGCTGGGTTGCTTCCTCTATGGTAGACAAAAAGAAGAGTGGGAAAGTGCTCTGGAAAAACTAAGTCAAGCTCCACCCAAGGACATTGTTGATGTTCTAAAGTTGAGTTTCGATGGACTTGATGACAAACAGCAAAATGTGTTTCTTGACCTGGGAAACGGGCCTTGA 1602 0.3833 MSYFFGASLHIQNLIEEEDICKLSSKLTCFRPCELIKLTSTRLKLETAVTTIASMLQKALLILLGVSISKTIRLISRSRNCNQLVGIDACSEDNIILTQTVSPPATKYDVFLSFRGEDTRHNFASSLYRRLQNAGIHTFMDHELRKGEPISPVLLRTIEESKISVIIFSYHYASSTWCLDELVHILECKRKFGRIAIPIFYNVDPSDVRKQNGNFGKGFNVLKQRFKDNQQKLQKWSNALFQSTSLSGWDPHSTRPEFKLIEEIVKDILRKLSYASSSHLEGLIGIARHIENIQRLLTEARIVGIWGMGGAGKTTLAKAIFQELKAQFDAFSFIENVKKQLKRISLDELQKNYLKELLKDEDISIYDIKSTFVKNRLQRKKILLILDDVDNSTVAADLTRVLDWFGEGSRIIITSRDMQVLKNASATFSTYHVPDLDFEDAFHLFSLKAFKRHEPSKGYMELSKSVVKYCHGNPLALVVLGCFLYGRQKEEWESALEKLSQAPPKDIVDVLKLSFDGLDDKQQNVFLDLGNGP 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5298g00006 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 529 IPR027417 -
Pral5298g00006 533 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 108 528 IPR044974 GO:0006952
Pral5298g00006 533 PRINTS Disease resistance protein signature 376 390 - -
Pral5298g00006 533 PRINTS Disease resistance protein signature 302 317 - -
Pral5298g00006 533 PRINTS Disease resistance protein signature 470 484 - -
Pral5298g00006 533 ProSiteProfiles TIR domain profile. 106 272 IPR000157 GO:0007165
Pral5298g00006 533 SUPERFAMILY Toll/Interleukin receptor TIR domain 100 249 IPR035897 -
Pral5298g00006 533 Gene3D - 276 430 IPR027417 -
Pral5298g00006 533 Gene3D - 105 275 IPR035897 -
Pral5298g00006 533 Pfam TIR domain 107 279 IPR000157 GO:0007165
Pral5298g00006 533 SMART till_3 107 246 IPR000157 GO:0007165
Pral5298g00006 533 Gene3D - 435 519 IPR042197 -
Pral5298g00006 533 Pfam NB-ARC domain 290 503 IPR002182 GO:0043531
Pral5298g00006 533 FunFam Disease resistance protein (TIR-NBS-LRR class) 104 274 - -
Pral5298g00006 533 FunFam Disease resistance protein (TIR-NBS-LRR class) 437 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5298g00006 Pral-Chr5298 147448 164393 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5298g00006 108 529 WRKY Transcription Factor Family AT4G12020 30.303 1.32e-45 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5298g00006 - - pcin:129286024 629.017