Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5298g00002 ATGCCTCTACCTCCTCCCTTGCCTTTGATGATGTCGATAGATCACTATTCCAGCACGACTCCGTTCTCCTCTCCCACAGCAAATACACTCTTCTCTCACACAATACTCCTATCGCCGCAAAATGGAAACAAACTCTTGCGCACAAATAAACAGAGCACACCGCAAAGAATGGCCGACGGGATATACAAAGGAAGTTACCGCGCGTTTTGGGGGGGAGGAGAGCGCGGACAGAACTTGATTGAAGAGGAAGACGTCTGCAAATTAAGCTCGAAACTGAGATGTTTTAGATGCTGTGAGCTAATTAAGCTGACATCCGCCAGACTCATCTCTTGTTCGCGTAATGGTAACCAACCTGTTGCTATTGATGCCAGCTTTGAAGACGATATTATTTTAACTCAAACGGTTTCTCCTCGTGCTACCAACTATGATGTGTTCCTTAGCTTTAGAGGAGAAGACACTCGCCACAATTTTGCAAGTAATCTTTACAAAGGACTTCGAAATGCGGGCATTCACACTTTTATGGATCATGAACTTCGAAAAGGAGAACCAATCTCACCGGTTCTTCTAAGAACTATAGAGGAATCAGAAATATCTGTAATTATTTTCTCTGAGAATTATGCTTCTTCAACTTGGTGTGTGGATGAGCTTGTTCATATATTAGAATGCAAGCGTAAATTTGGAAGGGTTGCAATACCTATTTTCTATGATGTAGATCCCTCAGACGTACGCAAACAAAATGGGAATTTTGGAAGAGGATTTGATGTATTGAAGCAAAGATTTAAAGACAACCAACAAAAATTGCAAAAGTGGAGAAATGCTTTATTCCAATCCACAGGTCTCTCTGGATGGGATTCTCACAGCACCAGACCTGAATTCAAACTTATTGAAGAGATTGTCAAGGATATTTTGAGGAAGTTGAGCTATGCGTCATCATCTCATCTTGAAGGACTCATTGGCATTGCTCGACATATTAAAAACATTCAAAGGCTTCTGAGTGAGGCTCGCATTGTGGGAATATGGGGTATGGGCGGTGCTGGTAAGACCACAATTGCTAAAGCCATATTTCAAGAGTTGAAAGCTCAATTTGATGCTTTCTCCTTTATTGAAAATGTCAAAGAGCAATTAAAAAGAATTAGTTTGGATGAGTTGCAGAAGAATTGCCTCAAAGAATTATTAAAAGATGAGGATATTAGCATCTATGAAATAAAATCCACTTTTGTGAAAAATAGGCTTCAGAACAAAAAAATTCTTCTTATACTTGATGATGTGGACAATTCAATAGTAGCGGTAGATTTAACCAAGGTACTTGATTGGTTTGGAGAAGGAAGTAGAATTATTATCACATCAAGGGACATGCAAGTGCTGAAGAATGCTTCTGCGGCATTTTCAACATATCATGTTCCGGATTTGGATTTTGAAGATGCTTTTCATCTCTTCAATTTGAAAGCATTCAAGCGAGATGAGCCATCTAAAGGTTACATGGAGTTATCAAAATCAGTAGTGGAATATTGTCACGGAAACCCATTAGCCCTAGTAGTGCTGGGTTGCTTCCTCTATGGCAGACAAAAAGAAGAGTGGGAAAGTGCTTTGGAAAAACTAAATCAAGCTCCACCCAAGGACATTGTTGATGTTCTGAAGTTGAGTTTCGATGGACTTGATGACAAACAGCAGAATGTGTTTCTTGACCTAGCATTCTTAATCAAGCAAGGAGTTCGTATTTCTATGAACCTAATG 1734 0.3973 MPLPPPLPLMMSIDHYSSTTPFSSPTANTLFSHTILLSPQNGNKLLRTNKQSTPQRMADGIYKGSYRAFWGGGERGQNLIEEEDVCKLSSKLRCFRCCELIKLTSARLISCSRNGNQPVAIDASFEDDIILTQTVSPRATNYDVFLSFRGEDTRHNFASNLYKGLRNAGIHTFMDHELRKGEPISPVLLRTIEESEISVIIFSENYASSTWCVDELVHILECKRKFGRVAIPIFYDVDPSDVRKQNGNFGRGFDVLKQRFKDNQQKLQKWRNALFQSTGLSGWDSHSTRPEFKLIEEIVKDILRKLSYASSSHLEGLIGIARHIKNIQRLLSEARIVGIWGMGGAGKTTIAKAIFQELKAQFDAFSFIENVKEQLKRISLDELQKNCLKELLKDEDISIYEIKSTFVKNRLQNKKILLILDDVDNSIVAVDLTKVLDWFGEGSRIIITSRDMQVLKNASAAFSTYHVPDLDFEDAFHLFNLKAFKRDEPSKGYMELSKSVVEYCHGNPLALVVLGCFLYGRQKEEWESALEKLNQAPPKDIVDVLKLSFDGLDDKQQNVFLDLAFLIKQGVRISMNLM 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5298g00002 578 Gene3D - 469 553 IPR042197 -
Pral5298g00002 578 Gene3D - 139 308 IPR035897 -
Pral5298g00002 578 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 142 566 IPR044974 GO:0006952
Pral5298g00002 578 SMART till_3 141 280 IPR000157 GO:0007165
Pral5298g00002 578 ProSiteProfiles TIR domain profile. 140 306 IPR000157 GO:0007165
Pral5298g00002 578 Gene3D - 309 464 IPR027417 -
Pral5298g00002 578 Pfam NB-ARC domain 327 537 IPR002182 GO:0043531
Pral5298g00002 578 Pfam TIR domain 141 313 IPR000157 GO:0007165
Pral5298g00002 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 563 IPR027417 -
Pral5298g00002 578 SUPERFAMILY Toll/Interleukin receptor TIR domain 134 283 IPR035897 -
Pral5298g00002 578 PRINTS Disease resistance protein signature 410 424 - -
Pral5298g00002 578 PRINTS Disease resistance protein signature 336 351 - -
Pral5298g00002 578 PRINTS Disease resistance protein signature 504 518 - -
Pral5298g00002 578 FunFam Disease resistance protein (TIR-NBS-LRR class) 138 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5298g00002 Pral-Chr5298 33507 42637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5298g00002 139 564 WRKY Transcription Factor Family AT4G12020 29.561 5.31e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5298g00002 - - pcin:129286024 617.461