Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5298g00001 ATGCTCCAAAAAGCTTTATTGATCCTATTGGGAGTATCAATTTCCAAAGCCATCAGACTCATCTCTCGTTCGCGTAATGGTAACCAACCTGTTGCTATCGCTACTAGCTCTGAAGATGATATTATTTTAACTCGTCCTGCTACCAAGTATGATGTGTTCCTTAGCTTTAGAGGAGAAGACACTCGCCACAATTTTGCAAGTTATCTTTACAAAGGACTTCGAAATGCGGGCATTCACACTTTTATGGATCATGAACTTCGAAAAGGAGAATCAATCTCACCGATTCTTCTAAGAACAATAGAGGAATCAGAAATATCTGTGATTATTTTCTCTGAGAATTATGCTTCTTCAACTTGGTGTCTAGACGAGCTTGTTCACATATTAGAATGCAAGCGTAAATTTGGAAGAGTTGTGATACCTGTTTTCTATAACGTAGATCCTTCAAGCATACGCAAACAAAATGGGTATTTTGGAAAAGGATTTGATGCATTGAAGCAAAGATTTAAAGACAACCCAGAAGAATTGCAAAAGTGGAGAAATGTTTTAATCCAATCTACAAATCTCTCCGGATGGGATTCCCACAGTACCAGACCTGAATTCAAACTTATTGAAGAGATTGTCAAGGATATTTTGAGAAAGTTGAACTATGCGTCATCATCTCATCTTGAAGGACTCATTGGCATTGCTGGACATGTTAGAAACATTCAAAGGCTTCTAATTGAGACCCGTATTGTGGGAATATGGGGTATGGGCGGTGCTGGTAAGACCACACTTGCTAAAGCTATACTTCAGGAGTTAAAAGCTCAATTTGATGCTTTCTCGTTTATTGAAAATGTCAAAGAGCAATTAAAAAGAATTAGTTTGGATGAGCTGCAGAAGAATTGCCTTAAAGAATTATTAAAAGATGAGGATATTAGCATCTATGACATAAAATCCACTTTTGTGAAAAATAGGCTTCAGAGAAAAAAAATTCTTCTTATACTTGATGATGTGGACAATTCAACAGTAGCGGTAGATTTAACTAGGGTACTTGATTGGTTTGGAGAAGGAAGTAGAATTATTATCACATCAAGGGACATGCAAGTGCTGAAGAATGCTTCTGCGACATTCTCAACATATCATGTTCCGGATTTGGATTTTGAAGATGCTTTTCATCTCTTCAATTTGAAAGCATTCAAGCGAGATGAGCCATCTAAAGGTTACATGGAGTTATCAAAATCAGTAGTGAAATATTGTCACGGAAACCCGTTAGCCCTAGTAGTGCTGGGTTGCTTCCTTTATGGCAGGCAAAAAGAAGAGTGGGAAAGTGCTTTGGAAAAACTAAGTCAAGCTCCACCCAAGGACATTGTTGATGTTCTGAGGTTGAGTTTCGATGGACTTGATGACAAACAGCAAAATATGTTTCTTGACCTGGCATTCTTAATCAGGCAAGGAGTTCATATTTCTTTGAACCTATTGAGACAATTATATTGTTCTTCTATGCATATTGAGATAAGTGTTCTAAGAGAAAAGTCTCTCATTTCATTTAATGATCATAATGATTTCATTGAGATGCATGATCTTCTGAGGGAAATGGGCCTTGAAATTTCAAGCCAACAATTACTCTCTGGTCGTAAAACACATGTTCGACTATGGAGGCATGAGGACATTTATTACTTTTTCCACAATGACCAGGCCATTGAGGCAATTCGATGCATGTCGTTGGATGCAAGCAAGATAGAAAGCATCACATTGATGGCTAGTCATTTTCGAAGAATGCGCTATTTAATGGAAAACCTTCAAAGTTGA 1788 0.3753 MLQKALLILLGVSISKAIRLISRSRNGNQPVAIATSSEDDIILTRPATKYDVFLSFRGEDTRHNFASYLYKGLRNAGIHTFMDHELRKGESISPILLRTIEESEISVIIFSENYASSTWCLDELVHILECKRKFGRVVIPVFYNVDPSSIRKQNGYFGKGFDALKQRFKDNPEELQKWRNVLIQSTNLSGWDSHSTRPEFKLIEEIVKDILRKLNYASSSHLEGLIGIAGHVRNIQRLLIETRIVGIWGMGGAGKTTLAKAILQELKAQFDAFSFIENVKEQLKRISLDELQKNCLKELLKDEDISIYDIKSTFVKNRLQRKKILLILDDVDNSTVAVDLTRVLDWFGEGSRIIITSRDMQVLKNASATFSTYHVPDLDFEDAFHLFNLKAFKRDEPSKGYMELSKSVVKYCHGNPLALVVLGCFLYGRQKEEWESALEKLSQAPPKDIVDVLRLSFDGLDDKQQNMFLDLAFLIRQGVHISLNLLRQLYCSSMHIEISVLREKSLISFNDHNDFIEMHDLLREMGLEISSQQLLSGRKTHVRLWRHEDIYYFFHNDQAIEAIRCMSLDASKIESITLMASHFRRMRYLMENLQS 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5298g00001 595 SMART AAA_5 241 381 IPR003593 GO:0016887
Pral5298g00001 595 Pfam TIR domain 49 221 IPR000157 GO:0007165
Pral5298g00001 595 Pfam NB-ARC domain 234 444 IPR002182 GO:0043531
Pral5298g00001 595 Gene3D - 377 461 IPR042197 -
Pral5298g00001 595 SMART till_3 49 188 IPR000157 GO:0007165
Pral5298g00001 595 SUPERFAMILY Toll/Interleukin receptor TIR domain 47 191 IPR035897 -
Pral5298g00001 595 Gene3D - 212 373 IPR027417 -
Pral5298g00001 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 471 IPR027417 -
Pral5298g00001 595 FunFam Disease resistance protein (TIR-NBS-LRR class) 46 216 - -
Pral5298g00001 595 FunFam Disease resistance protein (TIR-NBS-LRR class) 379 461 - -
Pral5298g00001 595 SUPERFAMILY "Winged helix" DNA-binding domain 448 552 IPR036390 -
Pral5298g00001 595 Gene3D - 47 211 IPR035897 -
Pral5298g00001 595 PRINTS Disease resistance protein signature 412 426 - -
Pral5298g00001 595 PRINTS Disease resistance protein signature 244 259 - -
Pral5298g00001 595 PRINTS Disease resistance protein signature 318 332 - -
Pral5298g00001 595 ProSiteProfiles TIR domain profile. 48 214 IPR000157 GO:0007165
Pral5298g00001 595 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 50 590 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5298g00001 Pral-Chr5298 17171 20756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5298g00001 50 569 WRKY Transcription Factor Family AT4G12020 28.733 2.29e-50 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5298g00001 - - pcin:129286024 742.651