Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5296g00001 ATGGAGGAGGATGCGATTCAAGCACAAGCGTGTAAATTCGCTAGAGTCGGAAATGGCAGAAACGACTTCAACAGGATAGGTTCTAGAGGGAGCGAGCAATGGCCAGACGGCGAAGAAGACGGAGAGCTGTTGAGAAGAGGGGGAGTTGGCGACGTCAGCTCGAATCGGTTCCATAGCTGGCACCACCATTCTTCAAGAATCATTAGGGTTTCTCGAGCATCTGGAGGGAAAGACCGGCACAGCAAGGTCATGACTTCAAAGGGTTTAAGAGACCGAAGGGTCAGGCTCTCGGTCACCACAGCAATCCAGTTCTATGATCTTCAAGATCGGCTTGGCTATGACCAACCCAGTAAAGCTGTGGAGTGGCTGATCAAAGCAGCTGGTGACGCCATTTCTGAGCTTCCGTCTCTGAACAACACATTCCCTGATAGCCCAAAGCGGCCAAGCGATGAGAAAAGAGGGGGTGTCGGAACAGTACAAGGGTTTGATGCAGCTCATGCTGAGGTAGGTGGTGAGGGTGATTATCATCAGACTCAAAGTCAGAACCTTTCTTTGTCTAAGTCTGCCTGTAGCAGCACTTCCGAGACAAGCAAAGGCTCCGGCTTGTCCCTCTCAAGGTCTGAGATTCGAGTAAACCGTGTGAAAGCCCGAGAGAGGGCAAGAGAGAGAGCAGCAAAAGAGAAGGAGAAAGAGAACACTGCCCATCCCCACAATAATGTGAATAACCCCATTTCTCAAACTGCTTCTTTCACCGAGCTTCTCACGGGGGGGATTACTAGTACGGTTCCTTCCACCACGAGTCCCACCGGTGATGATCATCATGAGACTAATTTGTTCAACAAGGCAGCGAGACAGCAATGGTGTACAACACCCATGGACTACTTCAACTCAGGCCTTGTGGGGAATCCCTCTATTAGAACTCATAATCAATCTTCAGGGTTTTCAGGACAAATCCAATTGGCAAACTCTTCCCTTCCCCTTCAGGCACTGTCTGTTTCTCCATTCAGTGTGGGGGGCGAAAATCACTCAGATCAGCTGCAGCATTTCTCATTCATGCCTACTGACCATCTCATACCTGGCGGAAGCAGTGACTACAACTTCAACTTCACCATCTCTTCTTCTGCAGGCCTAGCTGGTTTCAACAGGGGGACCCTTCAGTCCAATTCACCGTCTGTTTTGCCTCACCCTCTTCAGAGGTTTTCTACTCCTGTAGACGGATCCAATCTACCTTTCCTCATAGGAGCTGCTGCTGCACAAACCATGGAGAATCACCACCACCACCAGTTCCCACCTGGATTTGATGGCCGTTTGCAGCTACGTTATGGCGACGTAACCCGCCATTCTGACCACAAGGGCAAAGGCAAGAACTGA 1371 0.5026 MEEDAIQAQACKFARVGNGRNDFNRIGSRGSEQWPDGEEDGELLRRGGVGDVSSNRFHSWHHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAGDAISELPSLNNTFPDSPKRPSDEKRGGVGTVQGFDAAHAEVGGEGDYHQTQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARERAAKEKEKENTAHPHNNVNNPISQTASFTELLTGGITSTVPSTTSPTGDDHHETNLFNKAARQQWCTTPMDYFNSGLVGNPSIRTHNQSSGFSGQIQLANSSLPLQALSVSPFSVGGENHSDQLQHFSFMPTDHLIPGGSSDYNFNFTISSSAGLAGFNRGTLQSNSPSVLPHPLQRFSTPVDGSNLPFLIGAAAAQTMENHHHHQFPPGFDGRLQLRYGDVTRHSDHKGKGKN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5296g00001 456 Pfam TCP family transcription factor 75 230 IPR017887 -
Pral5296g00001 456 MobiDBLite consensus disorder prediction 210 235 - -
Pral5296g00001 456 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 59 379 IPR005333 GO:0003700
Pral5296g00001 456 MobiDBLite consensus disorder prediction 174 207 - -
Pral5296g00001 456 ProSiteProfiles TCP domain profile. 76 134 IPR017887 -
Pral5296g00001 456 MobiDBLite consensus disorder prediction 134 157 - -
Pral5296g00001 456 MobiDBLite consensus disorder prediction 172 244 - -
Pral5296g00001 456 ProSiteProfiles R domain profile. 210 228 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5296g00001 Pral-Chr5296 5762 13583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5296g00001 55 456 TCP Transcription Factor Family AT4G18390 45.688 2.03e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pral5296g00001 TCP 2.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5296g00001 - - jre:109011061 479.174