Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5294g00006 ATGGGAACAGGAAGCCTTGTGTGGAGTTTTACAAAGAAACTTATCACGTTTGGGCTCATTACTGTCACAGTAACAGATCGTTTTCTGACCATTGTTCCAGTTCGTGGTGGCTCTATGTCTCCCACATTTAATCCTAAAACCAGCTCTTTGGTGGGAAATATTTCTGATGACTATGTCTTGGTTGAGAAATTTTGCCTTGGAAACTATAGGTTTTCCCGTGGTGATGTGGTGGTATTCCGCTCCCCGTTGAATCACAAGGAGACACACATAAAGAGAATTGTTGGATTACCTGGTGAGTGGTTTGGTGCACTTCGTAACTATGATGTGCTGAAGGTTCCAGAAGGACAATGCAGCTTCCAGCCTGGATTCAACCTCATTGGGTCCTGTATCAAAATGCACACCACAAAAGTCGACCAACTCATCCTTAATTGCTAG 435 0.4368 MGTGSLVWSFTKKLITFGLITVTVTDRFLTIVPVRGGSMSPTFNPKTSSLVGNISDDYVLVEKFCLGNYRFSRGDVVVFRSPLNHKETHIKRIVGLPGEWFGALRNYDVLKVPEGQCSFQPGFNLIGSCIKMHTTKVDQLILNC 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5294g00006 144 Pfam Signal peptidase, peptidase S26 11 99 IPR019533 GO:0004252|GO:0006465
Pral5294g00006 144 NCBIfam signal peptidase I 18 100 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pral5294g00006 144 Gene3D Umud Fragment, subunit A 24 122 - -
Pral5294g00006 144 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 117 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Pral5294g00006 144 SUPERFAMILY LexA/Signal peptidase 29 115 IPR036286 -
Pral5294g00006 144 CDD S26_SPase_I 31 96 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5294g00006 Pral-Chr5294 24966 26797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5294g00006 39 99 MADS-box Gene Family AT1G29960 39.344 1.21e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5294g00006 K09648 - qsa:O6P43_016615 189.889