Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5294g00002 ATGAAGACTGGCAAAGGGAAGGGAGCTGTAAAGAACTCTAGGGAATCGTTGAAGCCTGTCGATGATAGAAAGGTCGGAAAGAGAAAGGCTGCGGCTAAACCTGACAAAAGTAGCAAACGGATGACCAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCACCCAGTGCTTTCTTTGTCTTCCTTGAGGAGTTCAGAGCAACCTTTAAGAAGGAAAATCCTACTGTGAAGGCAGTATCAGCTGTTGGGAAAGCCGGAGGAGAGAAATGGAAATCCTTGTCTGAGGCTGAGAAAGCTCCGTATGAAGCCAAGGCTGCGAAAAGGAAAGCTGACTATGAAAAAATTATGAATGCTTATAACAAAAAGCAGGCAAGCACTGCAGATGATGGAGGTAATGAATCAGACAGGTCCAAATCTGAAGTTCATGATGAAGATGAAGAGGAGGCACACCAAGAGGAAGAGGAGGAGGAGGATGAAGAAGACGACGAAGAGGAGGATGATGACTGA 507 0.4556 MKTGKGKGAVKNSRESLKPVDDRKVGKRKAAAKPDKSSKRMTKAKKDPNKPKRPPSAFFVFLEEFRATFKKENPTVKAVSAVGKAGGEKWKSLSEAEKAPYEAKAAKRKADYEKIMNAYNKKQASTADDGGNESDRSKSEVHDEDEEEAHQEEEEEEDEEDDEEEDDD 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5294g00002 168 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 154 IPR031061 -
Pral5294g00002 168 Pfam HMG (high mobility group) box 51 120 IPR009071 -
Pral5294g00002 168 MobiDBLite consensus disorder prediction 146 168 - -
Pral5294g00002 168 Coils Coil 142 168 - -
Pral5294g00002 168 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 51 120 IPR009071 -
Pral5294g00002 168 MobiDBLite consensus disorder prediction 90 116 - -
Pral5294g00002 168 SMART hmgende2 50 121 IPR009071 -
Pral5294g00002 168 MobiDBLite consensus disorder prediction 84 168 - -
Pral5294g00002 168 Gene3D High mobility group box domain 34 133 IPR036910 -
Pral5294g00002 168 MobiDBLite consensus disorder prediction 8 52 - -
Pral5294g00002 168 SUPERFAMILY HMG-box 42 123 IPR036910 -
Pral5294g00002 168 CDD HMG-box_AtHMGB1-like 52 112 - -
Pral5294g00002 168 MobiDBLite consensus disorder prediction 1 55 - -
Pral5294g00002 168 MobiDBLite consensus disorder prediction 128 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5294g00002 Pral-Chr5294 11357 14304 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pral5294g00002 HMG_box 1.5e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5294g00002 K25507 - mof:131167286 222.631