Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5293g00013 ATGGCGATTCTGGACCGACTAGTGAGGACTTCTCGACTATGGCGTTCAATTTCGTCTCCTAAAACCCTAACTCCTTCTGCTTGCTCGCGCCGCATTACCCGACCTTCCACTAACAGATCTGCGTTTTCGTCTGAGGTTTTCAGTTCTAGAGGTCTACCTCATGCTGCCGAACCGTATTCGTTGTTTCCCCTTGTGTTAGCTGGTATTTTTGGGGTTGGAGTTCTAGAAATGGCATACGCGGATGCTAATGAGTCTGCAGATGAGGGTCGGAAAGAGCCTGCCAAGACTGAACCTTCCTCATCATCAGCCTTTCCTTCAAGTCATGAGGATTTGGAAGGAATTGCCAAGAAATTACGGTCCCAAATAATGCTGAAACTTGTAAATAGAGGACTTTCAGCTGCTTCTCACCCTGAGTTCACTGTTTCTGTTAAAGGTCAAAAGGTCAGCACCAAGTTCCAAATTCCTCCTGCATGTGAAGTTTCCCATCTTCTTGCCAATCTCGTTTCCCAACTTGGCGTGAAGACTGAAGAGAATGGGGGTGGTTCAGATATGTTAATCCGTGCTTGGGACAGGTTTTCTTGTTCATTTCCTAGAATGCTGATGCGTGTCAATGGGTTAGTAAGTAATCTTGAGTCAGGTAGAGAAATAGAAGATACAATACTATTAGCTTTACAAAGACCTGAAGTATATGATGATATTGCTCGTCGGACTCGTCATAAGTATGAGACAACCAGGCCACGAGCTGTGCTCTTTGAAGGCCCACCAGGTACAGGGAAAACTTCTTGCGCTCGTGTTATTGCTAGTCAAGCGGGTGTCCCATTGCTGTATGTACCACTGGAGGTAGTCATGTCCAAATACTATGGTGAAAGCGAGCACTTGCTAGGAAAAGTTTTTGCTCTTGCAAATGAACTTCCCAAGGGTGCTCTTATTTTTCTGGATGAGATTGATTCTTTTGCTGCTGCCCGTGATGGTGAAATGCATGAAGCAACACGCAGGATATTATCAGTCTTATTGCGACAGATTGATGGCTTTGAGCAGGATAAGAGAGTGATTGTCATTGGTGCTACAAACAGAAAGCAAGACCTTGATCCAGCATTAATCAGTCGGTTTGATACTATGATCACTTTTGACCTGCCTGATCATGATAACCGCAAAGAAATAGCAGCCAAATATGCCAAGCACCTTACAGAACCAGAGTTAGATGAGCTTGCAAGAGTGACAGAAGGTATGTCTGGAAGAGACATTAGAGATGTTTGTCTGCAAGCTGAAAGGTCCTGGGCATCAAAGATTATTCGAGGAAAAGTATCTAAAGACGGAGATGAAACTTGTCTTCCACCTCTGCAAGAATATATGGACAGTGGCTCCAACAGGCGAAAAGCCTTGCTTAGCGCTGCAACAAACCAGCAATTCCGAAGTTCCTCTCCCATTGGCAAAAGGAGCCAGCTAGATATGATTTGA 1458 0.4472 MAILDRLVRTSRLWRSISSPKTLTPSACSRRITRPSTNRSAFSSEVFSSRGLPHAAEPYSLFPLVLAGIFGVGVLEMAYADANESADEGRKEPAKTEPSSSSAFPSSHEDLEGIAKKLRSQIMLKLVNRGLSAASHPEFTVSVKGQKVSTKFQIPPACEVSHLLANLVSQLGVKTEENGGGSDMLIRAWDRFSCSFPRMLMRVNGLVSNLESGREIEDTILLALQRPEVYDDIARRTRHKYETTRPRAVLFEGPPGTGKTSCARVIASQAGVPLLYVPLEVVMSKYYGESEHLLGKVFALANELPKGALIFLDEIDSFAAARDGEMHEATRRILSVLLRQIDGFEQDKRVIVIGATNRKQDLDPALISRFDTMITFDLPDHDNRKEIAAKYAKHLTEPELDELARVTEGMSGRDIRDVCLQAERSWASKIIRGKVSKDGDETCLPPLQEYMDSGSNRRKALLSAATNQQFRSSSPIGKRSQLDMI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5293g00013 485 MobiDBLite consensus disorder prediction 463 479 - -
Pral5293g00013 485 ProSitePatterns AAA-protein family signature. 350 369 IPR003960 GO:0005524|GO:0016887
Pral5293g00013 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 425 IPR027417 -
Pral5293g00013 485 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 202 423 - -
Pral5293g00013 485 SMART AAA_5 245 380 IPR003593 GO:0016887
Pral5293g00013 485 Gene3D - 379 434 - -
Pral5293g00013 485 MobiDBLite consensus disorder prediction 85 108 - -
Pral5293g00013 485 Pfam ATPase family associated with various cellular activities (AAA) 249 377 IPR003959 GO:0005524|GO:0016887
Pral5293g00013 485 CDD RecA-like_protease 234 376 - -
Pral5293g00013 485 Gene3D - 214 378 IPR027417 -
Pral5293g00013 485 MobiDBLite consensus disorder prediction 463 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5293g00013 Pral-Chr5293 170455 176449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5293g00013 245 422 Calmodulin-binding Proteins AT3G56690 37.097 1.89e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5293g00013 - - pcin:129291977 501.13