Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5293g00005 ATGGAGTTTCTAGTGGCAATCGGGACAGGAATTGTGTCAAAACTTGGGGAGATGTTAATGGATCCAGTCACATCGCAATTCAAACATCTGATTCACTATGAGAAAAATATCAATAAAATGAAGAATGAACTCAACAATTTGAAAGACAGGAAGGGTGCGATTGAAGGAATGGTGGACGCAGACAGGAGGAATGGACGTCACATTGCTCCAAATGTTGAGCACTGGCTCTACCAAGTGGACAACGTTGTAGAAAATGAATTACATAAGGTGTACGATGATGAGTTAGTCAACAAGAACAAGAAATGCCTCAATGGGTTGTGTCCAAATTTGGTGTTTCGTTATTCACTGAGCAAGAAAGCGGGAAAAATGGCGCAAGATCTTGTTTCCCTGAAGGAGCAAAAATTTGAGTTCATATCCTACCCTGCGCCTTTGCCAACACTAGGATCCACTTTCACAGAAGGAATTAAGAGCTTTGCCTCAAGAGACTCTATTATGACTGAGGTTGTAGAGAAATTGAAGGGTGATGAGCTCCACAGGATAAGCCTTTGTGGGATGGGTGGTGTCGGGAAAACCACATTGGTGAAAGAGCTTATCAAAATTTTAGAAGCAGATAAGGCGTTTGATGAAATTTCAATGGCTATAGTGTCCCAAGTTCCTGACTATAGAAAGATTCAAGGTCAAATTGGTGACACCTTAGGCTTGAAACTTGATAAGGAAACTTTGCAAGGAAGGGCAAGTCAACTACTTGAGAGGCTTAACAAGATCAATAAGGTCCTCCTAGTGCTGGATGATGTATGGACAGAGCTGGATTTCGAGTTGATAGGGCTCCCTTCAAATGGGCATTGTCAGAAGGGCAGCAAAATTTTATTCACATCAAGAAATGAAGACGTATGCCACAGGATGAGAAGTCAGAGGAACTTCACTATCCCCGTTCTCTCTAAAGAAGAAGCATGGGATCTCTTCAGAGATACAGTAGGTGGTCATGTTGTGGACAAAGCTGAGATCCATAACATAGCACAAGAGGTTGCAAATGAATGTAGGGGCTTGCCAATTGCTATTGTCACAATAGCAAAAGCACTAGGGAACAAAGAGAAGCATGTATGGGAGGATGCACTTGATCAGCTGAGAAAGTCTTCACTAATTTCCTTCTCAGACATGCAAGAATATTCTATATATTCATGTATTGAATTAAGCTATAACTTTCTAGGCAATGAAGAGGCTAAATTTCTCCTTTTGCTTTGTTGCTTATTCCCAGAAGACTTTGACATTCCCATTGAAGTTCTACTCAGATATGGAGTGGGCTTGGGTTTGTTCAAGGATCTGGGTGCTTTGTGGAAAGCAAGGAATCGAGTGCATACCTTGGTTGATACTCTAAAGAAGCGGTTTCTGTTGCTGGACAGCAACGAGGAAGAGTGTGTGAAAATGCATGATGTCGTTCGTGATACTGTCGTAACAATTGCATCCAAAGAAGAGCATGGGTTTGCAGTGAAATATGATGCCGGACAGATAGGGTCAAAGGAGTTCACATGGCATCATAGTGCAATCTCACTTGTGTTTGATGAGATTAAGACGCATCCTAAGAGTTTGCAGTGTCCAAATCTTAGACTCTTACAAATTTTTTTAAAGAGAAGAGAACCCATTTCAGAAAATTTCTTCCATAACATGAGCAAGCTAATGGTTTTCGGCATAAGCAATCTGTGCATTCCATCAATGTCATCTCCATTCCGATCACTCAACAACCTCTGCACCTTACGGTTGGAAGATTGTCAGGTTGGAGACATATCGGTAATCTGTAATGAGCTAAGGAAACTAGAAGTCTTAAGCTTTGCCCACTCAAATATCAAAGAACTGCCAGTAGAAATAGGCAAACTATGTCTTCTAAGACTGTTGGATTTGACTGAATGCAATGAACTTGATCAGATCTCTCCTGGGGTCCTAGCTAGCTTATCTAACTTAGAAGAACTTTATCTTAGAGTCAGGAATTTCCATTGGGAGGAAAAGAATTCCATTCTTGCAGACCTCAAATCTCTTTCTCATCAGCTAAAAGTTCTTGAGATTTCAATAACAGGAATTCATATTTTTCCGAAAGATTTGGAGTTCAAAAACTTGGTTAAGTTCTGGATATATGTAAGAGACCCAACTACTCTTTCTCATGGCTTTGTTCGTCGGGGATATCTACACCCTAACATCCTTAAAGTAAACAGTGTGTACCATAAGGACATTAAAGAGAATGTGGCAATTCAACAGTTGCTTAAGAAATCTGAAATTCTCAACCTTGTGAATGTAAAACAACTAGAAAACGTGCTCTATGAGTTGGATGAAGAAGTCATTGTCTCTGCACAATTTGGACAATTTAAGAGAGATATGCCATGCCAAGAGTTTCACCTCTACTCGTCAATGCTTTGGCAGCTTGAGTGA 2418 0.4049 MEFLVAIGTGIVSKLGEMLMDPVTSQFKHLIHYEKNINKMKNELNNLKDRKGAIEGMVDADRRNGRHIAPNVEHWLYQVDNVVENELHKVYDDELVNKNKKCLNGLCPNLVFRYSLSKKAGKMAQDLVSLKEQKFEFISYPAPLPTLGSTFTEGIKSFASRDSIMTEVVEKLKGDELHRISLCGMGGVGKTTLVKELIKILEADKAFDEISMAIVSQVPDYRKIQGQIGDTLGLKLDKETLQGRASQLLERLNKINKVLLVLDDVWTELDFELIGLPSNGHCQKGSKILFTSRNEDVCHRMRSQRNFTIPVLSKEEAWDLFRDTVGGHVVDKAEIHNIAQEVANECRGLPIAIVTIAKALGNKEKHVWEDALDQLRKSSLISFSDMQEYSIYSCIELSYNFLGNEEAKFLLLLCCLFPEDFDIPIEVLLRYGVGLGLFKDLGALWKARNRVHTLVDTLKKRFLLLDSNEEECVKMHDVVRDTVVTIASKEEHGFAVKYDAGQIGSKEFTWHHSAISLVFDEIKTHPKSLQCPNLRLLQIFLKRREPISENFFHNMSKLMVFGISNLCIPSMSSPFRSLNNLCTLRLEDCQVGDISVICNELRKLEVLSFAHSNIKELPVEIGKLCLLRLLDLTECNELDQISPGVLASLSNLEELYLRVRNFHWEEKNSILADLKSLSHQLKVLEISITGIHIFPKDLEFKNLVKFWIYVRDPTTLSHGFVRRGYLHPNILKVNSVYHKDIKENVAIQQLLKKSEILNLVNVKQLENVLYELDEEVIVSAQFGQFKRDMPCQEFHLYSSMLWQLE 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5293g00005 805 Gene3D - 148 309 IPR027417 -
Pral5293g00005 805 Pfam NB-ARC domain 163 400 IPR002182 GO:0043531
Pral5293g00005 805 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 32 772 - -
Pral5293g00005 805 FunFam Probable disease resistance protein At1g61300 149 306 - -
Pral5293g00005 805 Coils Coil 238 258 - -
Pral5293g00005 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 411 IPR027417 -
Pral5293g00005 805 Gene3D Ribonuclease Inhibitor 512 801 IPR032675 -
Pral5293g00005 805 SMART AAA_5 176 322 IPR003593 GO:0016887
Pral5293g00005 805 Coils Coil 30 57 - -
Pral5293g00005 805 PRINTS Disease resistance protein signature 252 266 - -
Pral5293g00005 805 PRINTS Disease resistance protein signature 346 360 - -
Pral5293g00005 805 PRINTS Disease resistance protein signature 622 638 - -
Pral5293g00005 805 PRINTS Disease resistance protein signature 179 194 - -
Pral5293g00005 805 Gene3D - 398 485 IPR036388 -
Pral5293g00005 805 Gene3D - 311 397 IPR042197 -
Pral5293g00005 805 SUPERFAMILY L domain-like 474 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5293g00005 Pral-Chr5293 50815 53336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5293g00005 180 490 WRKY Transcription Factor Family AT5G45050 27.134 7.26e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5293g00005 - - aip:110262428 875.159