Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5290g00001 ATGGGCGAGTCTGGCAAGAAATCAGATCTCGGTTTTGACGCTGCTGTTGCTGGAGTCTCACCATCGAAGTCTGCCATGATTGAAACTTTCGTGTGGTTGTTTCCGTACTTTGATATTGATATAGGAAAGAGAGAAAGTGAAGATGAACCTGAGAAGCAAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGATGCTGAAAATCAAAAGAAGGAAAGTAGTTCAGATGACTCCTTTTTAGATTCTGCAAACTCAGATGAAGATTCTGCTTTGAATGATTCCAACGTAGCCCCTGCTGAAGGTAAGAGTGGGCCCAGTGCTGTACGGAAGAAAGGCGAATCAAGATCAGATACCGGGAGTAGCTCAGTTGATAAAGATGATATAAAAATAGAAGCAACCATAGTGCGTGAGAAATTGCCTAATGCTGGTGAGAAAGAGCCTGCTAAGAAAGTTGATTCAAGCAAACCCTCAGGCTTAGATTCTGACAGCAAAACTAATGAGGATATGGACAATGTAACCACATCATCGAAGAAGTCGCTTGCTACTTCTGCTGCAGGTAATAATAAATCCACTCATAAGTTTGTGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGATGATGTTCAGAAGACTCGCTTAACGTCATCATCTAAGAAGCTGCTTGCTTCTGCAGTTGTTCAAAGGGAGGGAATTGGGAAAAATGAGAACCCCTGCTATGGATCAAGAGAAGGATTTGATGAGTGCAATGTTTCAGAAGGAAACGAAGAGATCGAGGAGAAACCTTGTACAACTCAGAAAGATGTGAAAGATGAAGAAATGGTTGATGTTACCTCAATGGGAGCAACTAGAAAGGGAGTTCCTAAAACAGCGTTGACTTTAGAAAAACAAAATGCCACATCGAAAAAGATATTTGTTGGGAACTTATCATTAGAGATGAAAAGGGCCAATTTGGAAAATCTATTTAAGGGTTGTGGAGAAATTGTTGATGTCTCGTTTGGTTTATATCGTGACGGGACTTTTAGAGGCTTTGCTCATGTTGAGTTTGCCACTGAAGAAGCTGCACAGAATGCCCTTATGTTGAATGGGAGTGAGCTGTTAAGACGTTTTGTCAGAATTGAGATAGCCCGTGAAAAGTTTGCATATACCCCTAATAGCAGGAACAACACATTGAAGGGTTTTCAAGCATTCTCTGGAGATGGTGAGCCTACAATGTCAGCTACTTCAAAAGAACAAAATGCCACATCAAAGATGCTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCGGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTGTTGATATTCGATTTGCTACAGACCGTGAAGGGAGGTTTAAAGGCTTCGCACACGTTTTGTTTGCCACAGAGGCAGCAGCACAAATTGCCCTTATGTTGAACGGGAAAGAACTGTTGAGACGTTCTCTCAGGCTTGATCTAGCTCATGAAAGGGGTGTATATTCCCACAGTAGCAACAACAGGAATGAATCATCCCAGGAGGATAAATCGTTAGGAGGGAATGAGGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAGACAGTATTTGTTGGAAACCTGTCGTATAGCGTGGAAAGGGCTGATTTGTACGTACTATTTGATATGCAAGTTCTCGGTAGTTATTTCATACGGTGTCATGGAAAATTGTTTAAAGATTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTCGGACATATTGAGTTTGCCACTTATGAAGCGGCACAAACTGCCCTTAAGTTGAATGGAAGCGAACTGTTGAGACAATATATAAGGCTTGATTTGGCTCATGAAAAGATTGTGCATTCTTTCAATAGCGGCATTCATGGGAACACGGAAAACTCTGGAAGTGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCTTTAAGAGAAGATGAGATAAGGACCAGTCTGGGAGAGCATTTCAGTTCTTGTGGACTAATTTCGAGGATATCAATTGCAAGAGATTATGACACTGGTTCTACTAAGGGGCATGTTTCTTTCATTGTTCATTGTTTATAA 2118 0.4098 MGESGKKSDLGFDAAVAGVSPSKSAMIETFVWLFPYFDIDIGKRESEDEPEKQVTAKKQKRDWDAENQKKESSSDDSFLDSANSDEDSALNDSNVAPAEGKSGPSAVRKKGESRSDTGSSSVDKDDIKIEATIVREKLPNAGEKEPAKKVDSSKPSGLDSDSKTNEDMDNVTTSSKKSLATSAAGNNKSTHKFVSSNDSSLDSGLDEDDVQKTRLTSSSKKLLASAVVQREGIGKNENPCYGSREGFDECNVSEGNEEIEEKPCTTQKDVKDEEMVDVTSMGATRKGVPKTALTLEKQNATSKKIFVGNLSLEMKRANLENLFKGCGEIVDVSFGLYRDGTFRGFAHVEFATEEAAQNALMLNGSELLRRFVRIEIAREKFAYTPNSRNNTLKGFQAFSGDGEPTMSATSKEQNATSKMLFVGNLSYSVERADLENLFKDCGEIVDIRFATDREGRFKGFAHVLFATEAAAQIALMLNGKELLRRSLRLDLAHERGVYSHSSNNRNESSQEDKSLGGNEAKMPAAPKEQNATSKTVFVGNLSYSVERADLYVLFDMQVLGSYFIRCHGKLFKDCGEIIDIRLATDREGRFKGFGHIEFATYEAAQTALKLNGSELLRQYIRLDLAHEKIVHSFNSGIHGNTENSGSVESQTVFVRGFDTSLREDEIRTSLGEHFSSCGLISRISIARDYDTGSTKGHVSFIVHCL 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5290g00001 705 MobiDBLite consensus disorder prediction 498 528 - -
Pral5290g00001 705 MobiDBLite consensus disorder prediction 77 91 - -
Pral5290g00001 705 MobiDBLite consensus disorder prediction 167 201 - -
Pral5290g00001 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 534 627 IPR000504 GO:0003723
Pral5290g00001 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 418 494 IPR000504 GO:0003723
Pral5290g00001 705 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 379 IPR000504 GO:0003723
Pral5290g00001 705 SUPERFAMILY RNA-binding domain, RBD 533 697 IPR035979 GO:0003676
Pral5290g00001 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 371 IPR000504 GO:0003723
Pral5290g00001 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 420 487 IPR000504 GO:0003723
Pral5290g00001 705 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 569 620 IPR000504 GO:0003723
Pral5290g00001 705 Gene3D - 632 702 IPR012677 -
Pral5290g00001 705 SMART rrm1_1 419 490 IPR000504 GO:0003723
Pral5290g00001 705 SMART rrm1_1 304 375 IPR000504 GO:0003723
Pral5290g00001 705 SMART rrm1_1 535 623 IPR000504 GO:0003723
Pral5290g00001 705 Gene3D - 498 631 IPR012677 -
Pral5290g00001 705 Gene3D - 246 387 IPR012677 -
Pral5290g00001 705 Gene3D - 388 497 IPR012677 -
Pral5290g00001 705 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 164 405 - -
Pral5290g00001 705 MobiDBLite consensus disorder prediction 105 166 - -
Pral5290g00001 705 MobiDBLite consensus disorder prediction 498 515 - -
Pral5290g00001 705 SUPERFAMILY RNA-binding domain, RBD 295 386 IPR035979 GO:0003676
Pral5290g00001 705 SUPERFAMILY RNA-binding domain, RBD 417 554 IPR035979 GO:0003676
Pral5290g00001 705 MobiDBLite consensus disorder prediction 43 214 - -
Pral5290g00001 705 MobiDBLite consensus disorder prediction 43 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5290g00001 Pral-Chr5290 3101 19107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5290g00001 297 696 Eukaryotic Initiation Factors Gene Family AT1G49760 24.515 5.07e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5290g00001 - K11294 pcin:129311628 971.074