Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5288g00006 ATGGAGGTTATAGTCCCTGATGATGTTATTGTGGAAGTGGATGGCGCCTATTCTCATTTAGATGACAAAGCAGCTTGTGGAGGCGTTCTTAAAGATGGCAGCAATTGTATGAAGGAGGCTTTTCTTCTGAAATTAAGTGGCGGAGATACCCTCACAGCAAAACTATGGGGTTGCTTGATGGGTCTCAAAGGCGCGTGGGACGCTGGTACTGGAGATGTTATCTTGAGAAGCGACTCCGCCGAGGCTGTTCGATTGATCAAATTTGAAGTCCCTGAGATGCACAAGGATATTGCTCTCATCATGGAAATCAAAGGGATGCTAGAGGGGATTGGTTTGTGGATATCCACGTCTTTCATAGAGATGGCTACTGATATTACGCGAACTGAAGTTGAGAAAGATGGAGGTTATACTCAATGCTCTAGACATCAAGGTCAGTTCGTTGTTGAAGAAGATGAGTCCATACTTCCAAGATTCCAAATCCTTGCAATGGCGCATGATGCTGATGGAGATGGGGGCTCTTCAAGTTCTTCTGCTTCAACTAAGAGATGGAAGTATCATGTGTTCTTGAGTTTTCGAGGGGAAGATACTCGAACAAGTTTTACTGATCATTTGTATACTGCTTTAAAATGTAAAGGATTAAAAACTTTTAGGGATGAAGAAGAACTTGAAAGGGGAGAATCTATCACACCAAGTTTGATACAAGCAATTGAAGAATCTCTTTCTGCAATTGTGGTGCTCTCCCCAAGTTATGCTTCTTCAACTTGGTGTTTGGATGAGCTTCAAATGATTCTTCATTTAAAGGAAGAGTTGAGTCTTCAGGTATTTCCAATATTTTATGGAGTAGATCCATCTGATGTTAGGAAACAAAAGGGAAGTTTTGCAGAAGCATTCATGAAGCATGAAGAAAGATTTGCTCAAGACATAACAAAAGTGCAAAGATGGAGGGATGCTTTAGGAAAAGTTGCCACTACATCTGGTTGGGACTCAAAAAATCAGTATGAAACAAAATTCATTGAAAGCATTGCTAAAGAAATGATGACAAATTTACTTGATGAATCACCATCTGACCTTCGTATGTTAATTGGGATTGAATCAAAATTAGGTGAATTGGAGTCAATTGTAGCAAGGAAATCACAAGGAGATGGGTTTATAGGAATATGGGGCACAGGAGGTTTAGGCAAAACAACTCTTGCTAGAGCCTTTTATGAGCGAAAGCTTAAAGACTTCGAGATTCACTGCTTTCTCCATAATATTAGAGAGGCATATGAAAAAGATGGTTTGATGTCATTGCAAAGAAGACTTCTTTTTTCTATAGATAAAAGAAGTATGGAAGTGGATAATTTTTATGAAGGAATGAAGCTAATAAAAAACATGTTGGGCAACAAAAAATTTCTACTCGTCCTTGATGATGTGAGTGACGTTAGCCAACTTGAAAATTTGGCTCCAAAGCAAGGATGGTTCAGCAAGGGAAGCATAATATTAATAACAACTAGGGATAAGCATTTGCTATCATCACATGGTGTATCTTCTATGTATGACATCAAATTCTTGAATGATAATGAATCACTTAAACTTTTCCTTCAAAAAGCTTTTAAAGGAGAGCAACCTAATGAAGATTATTTGGACCTTGCTAGAACTATCATTAAATATGCTGGAGGCCTTCCTTTGGCACTTAAAGTGTTAGGTTCATTTCTTTGCAAAAGAACTATAATGGAATGGAAGGATGCACTGGCTAAGTTCAAGAAGGCTCCTCCAAAGGACATTTTGAAGATACTTCAAGTGAGTTTTGATGGATTGGACATTAAGGAGAAGACCATATTTTTAGATATCGCTTGTTTTTTCAATGGGATGGCCCAAGATCATGTCATACAAATTTTAGAAACTTTGGATGAGAATCTTCATCCAAGAATTGGAATAACTGTTCTTATTGAGAAATCATTGGTAATTGATTATGAAGGGTATCTGTGGGTGCATGAAATTCTACAAGATATGGGGAAATTTATTGCCTATCAACAATCACCTGATGATGCTGGGAAGCGTTCTAGGATATTATCTTTAGAGGATGCTAATCATTTGAATCTTCCTTATGGACTCAAGACACTTTCCAGTGAGTTGAAAATCATAGAATGGGAGAGAATTCCAGGCTGCTCAAAGCTTTCAAAGTTGCCCGAGAATTTGAATGAAAATGAGGCTTTGGAAGAGCTTGATTTGAGTAAAATTGCTGTGAAAGGCATGGCGGAGGTAATGAGATTCAAGGAATTACAGGCAGATGTGACAGGCATGAATGAACATGTGAAGCACAACGAAATCGCAATCAACATGAAGATTGAATAG 2334 0.3826 MEVIVPDDVIVEVDGAYSHLDDKAACGGVLKDGSNCMKEAFLLKLSGGDTLTAKLWGCLMGLKGAWDAGTGDVILRSDSAEAVRLIKFEVPEMHKDIALIMEIKGMLEGIGLWISTSFIEMATDITRTEVEKDGGYTQCSRHQGQFVVEEDESILPRFQILAMAHDADGDGGSSSSSASTKRWKYHVFLSFRGEDTRTSFTDHLYTALKCKGLKTFRDEEELERGESITPSLIQAIEESLSAIVVLSPSYASSTWCLDELQMILHLKEELSLQVFPIFYGVDPSDVRKQKGSFAEAFMKHEERFAQDITKVQRWRDALGKVATTSGWDSKNQYETKFIESIAKEMMTNLLDESPSDLRMLIGIESKLGELESIVARKSQGDGFIGIWGTGGLGKTTLARAFYERKLKDFEIHCFLHNIREAYEKDGLMSLQRRLLFSIDKRSMEVDNFYEGMKLIKNMLGNKKFLLVLDDVSDVSQLENLAPKQGWFSKGSIILITTRDKHLLSSHGVSSMYDIKFLNDNESLKLFLQKAFKGEQPNEDYLDLARTIIKYAGGLPLALKVLGSFLCKRTIMEWKDALAKFKKAPPKDILKILQVSFDGLDIKEKTIFLDIACFFNGMAQDHVIQILETLDENLHPRIGITVLIEKSLVIDYEGYLWVHEILQDMGKFIAYQQSPDDAGKRSRILSLEDANHLNLPYGLKTLSSELKIIEWERIPGCSKLSKLPENLNENEALEELDLSKIAVKGMAEVMRFKELQADVTGMNEHVKHNEIAINMKIE 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5288g00006 777 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 185 744 IPR044974 GO:0006952
Pral5288g00006 777 Gene3D - 7 126 IPR036397 GO:0003676
Pral5288g00006 777 SUPERFAMILY "Winged helix" DNA-binding domain 587 673 IPR036390 -
Pral5288g00006 777 SUPERFAMILY Ribonuclease H-like 8 109 IPR012337 -
Pral5288g00006 777 FunFam Disease resistance protein (TIR-NBS-LRR class) 181 351 - -
Pral5288g00006 777 CDD RNase_H_like 13 122 IPR044730 -
Pral5288g00006 777 PRINTS Disease resistance protein signature 458 472 - -
Pral5288g00006 777 PRINTS Disease resistance protein signature 551 565 - -
Pral5288g00006 777 PRINTS Disease resistance protein signature 383 398 - -
Pral5288g00006 777 Pfam TIR domain 184 357 IPR000157 GO:0007165
Pral5288g00006 777 Gene3D - 350 511 IPR027417 -
Pral5288g00006 777 Pfam NB-ARC domain 379 586 IPR002182 GO:0043531
Pral5288g00006 777 Gene3D - 178 349 IPR035897 -
Pral5288g00006 777 ProSiteProfiles TIR domain profile. 183 345 IPR000157 GO:0007165
Pral5288g00006 777 SMART till_3 184 324 IPR000157 GO:0007165
Pral5288g00006 777 Gene3D - 516 600 IPR042197 -
Pral5288g00006 777 Pfam Reverse transcriptase-like 13 100 IPR002156 GO:0003676|GO:0004523
Pral5288g00006 777 SUPERFAMILY Toll/Interleukin receptor TIR domain 174 327 IPR035897 -
Pral5288g00006 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 610 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5288g00006 Pral-Chr5288 67851 85338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5288g00006 361 683 WRKY Transcription Factor Family AT5G45050 34.568 6.49e-52 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5288g00006 - - pcin:129318967 704.516