Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5288g00005 ATGGTAGCAAGGGAATCAAAAGGAGTTGAGTTTCTAGGAATATGGGGCACAGGAGGCGTAGGCAAAACAACTCTTGCTAGAGCCCTTTATAAGCGGGAGCGAGAGCGCAAAAACTTTGAGATTCACTGCTTCCTTGATAATATTAGAGAGGCATGGGAAAAAGAAGGCTTGATTTCATTGCCAAGAAAACTTCTTTCTTCTCTAGATAGAAAGAGTATGGAAGTAGCTGACTTTTATGAAGGAATGGAGTTAATAAAAAGCAAGTTGACTGACAGAAAAATTCTACTTGTCCTTGACGATGTGAGTGATATTAGGCAACTTGAAAATTTGGTGCCAAAGAAAGGATGGTTCAGCGAAGGGAGCATAATAATAATAACAACTAGGGATAAGCATTTGTTATCATCACACAGTGTATCTGTTGTGTATGAATTCAAATTATTGAGTGATAAAGAGTCTCTTGATCTTTTCCTTGAAAAAGCTTTTAAAGAAGAGCATCCTAATGAAGATTATTTGAAACTTGCTCGAAGCGTCATTAAGTATGCTGGAGGCCTTCCTTTAGTACTCACAGTGTTAGGTTCATCTCTTTGCAAAAGACCAATAGTGGAATGGAAGGATGAACTAGCTAAGCTCAAGCAAATTCCTCCAAAGGACATTTTGAAGATACTTCAAGTGAGTTTTGATGGACTGGACGATCAGCAGAAAACCATATTCTTGGATATTGCTTGCTTTTTCAATGGGATGGACAAAGATCATGTCATACAAATTTTAGAAACTTTGGATAAGGATCTTCGCGCAGGAACTGCGATAAATGTTCTCATTAAGAAATCACTAATAATTAGTTATGAAGGGCATTTGTGGGTGCATGAAATTCTCCGAGATATGTGTAAATATATTGTCTATCAAGAATCACCTTATGATGCCGGCAAGCGTTCCCGGATATTGTCTTTGGAGGATGCCAATCACGGGACAGAAGCAATCCGAGGAATAGCGCTAACATTGGAAAAGTCATGTGATGCATTTTGGGATCCTGAATCCTTCTCAAAGATGAGTAATCTTAGTCTCCTTGATGCATCACTTCCCGATGATATCAGCATGTTATCATCGTTGGAATTTTTAGATCTAAGTGGAAACAATTTCATTGACTTACCATCTGGCCTCATTTCCAATCTTTCGAAGCTCGAAGGTATTGGTCTCCTTGATTGCCCAAGGCTTCGGTCTTTGCCGCAACTTCCGTCAAATCTATTAGTCATAGCGGTTGAAGGTTCTTCATTAATGAAACATTACGGATGTGGAGATCAATTATGGGATTTCATTGAATCATTTCAACCTCAGGTTCGCAACCATTTAAATATGAACTTAGCAATTATAAGAGGGGATTCAGAACTTCTTGTTCCCCTCCGTCCACATTCTCGCATATTGGCAATTCCAGGTAGCAAAGTACCATCATGGTTTTATAATCAAAACTACTTTTGTGAGAAAGAATTCAGCTTATTTATATACGGCTGGGAGTCCTCAGCTTTTTATGTTGCATATTCATTGTTCCTCTTTGGTTACAAGCGGATTCCAAATGGTATTTTGCTTTGA 1584 0.3857 MVARESKGVEFLGIWGTGGVGKTTLARALYKRERERKNFEIHCFLDNIREAWEKEGLISLPRKLLSSLDRKSMEVADFYEGMELIKSKLTDRKILLVLDDVSDIRQLENLVPKKGWFSEGSIIIITTRDKHLLSSHSVSVVYEFKLLSDKESLDLFLEKAFKEEHPNEDYLKLARSVIKYAGGLPLVLTVLGSSLCKRPIVEWKDELAKLKQIPPKDILKILQVSFDGLDDQQKTIFLDIACFFNGMDKDHVIQILETLDKDLRAGTAINVLIKKSLIISYEGHLWVHEILRDMCKYIVYQESPYDAGKRSRILSLEDANHGTEAIRGIALTLEKSCDAFWDPESFSKMSNLSLLDASLPDDISMLSSLEFLDLSGNNFIDLPSGLISNLSKLEGIGLLDCPRLRSLPQLPSNLLVIAVEGSSLMKHYGCGDQLWDFIESFQPQVRNHLNMNLAIIRGDSELLVPLRPHSRILAIPGSKVPSWFYNQNYFCEKEFSLFIYGWESSAFYVAYSLFLFGYKRIPNGILL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5288g00005 527 Gene3D Ribonuclease Inhibitor 319 434 IPR032675 -
Pral5288g00005 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 240 IPR027417 -
Pral5288g00005 527 SUPERFAMILY "Winged helix" DNA-binding domain 217 303 IPR036390 -
Pral5288g00005 527 ProSiteProfiles Leucine-rich repeat profile. 368 389 IPR001611 GO:0005515
Pral5288g00005 527 Gene3D - 1 141 IPR027417 -
Pral5288g00005 527 Pfam NB-ARC domain 6 213 IPR002182 GO:0043531
Pral5288g00005 527 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 412 IPR044974 GO:0006952
Pral5288g00005 527 SUPERFAMILY L domain-like 341 421 - -
Pral5288g00005 527 PRINTS Disease resistance protein signature 88 102 - -
Pral5288g00005 527 PRINTS Disease resistance protein signature 364 380 - -
Pral5288g00005 527 PRINTS Disease resistance protein signature 11 26 - -
Pral5288g00005 527 PRINTS Disease resistance protein signature 181 195 - -
Pral5288g00005 527 Gene3D - 146 230 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5288g00005 Pral-Chr5288 64582 67701 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5288g00005 1 313 WRKY Transcription Factor Family AT5G45050 33.016 2.07e-47 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5288g00005 - - pcin:129317404 439.113