Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5288g00001 ATGGCGCGTGATGCTGATGGAGTTGGGTGCTCTTCAAGTTCTTCTGGTTCAACTAAGAGAAGGAAGTATCATGTGTTTTTGAGCTTTCGAGGGGAAGATACACGGAAAAATTTTTCTGATCATTTGTATGCCGCTTTAAAACGCAAAGGATTAAAAACTTTCAGGGATGAAGAAGAACTTGAAAGGGGAGAATCTATTAATCCAAGTTTAGTACAAGCAATTGAAGAGTCTCGTTCTGCAATTGTTGTGCTCTCCCCAAATTATGCTTCTTCAACTTGGTGTTTGGATGAGCTTCAAAAGATCCTGCAGTTAAAGGAAAAGACGAGTTTTCAAGTATTTCCGATATTTTACGGTGTAGATCCTTCTGATGTTAGGAAACAAAAGGGAAGTTTTGCAGAAGCATTCAGAAAGCATGAAGAAAGATTTACCGAAAACAAAAGAAAGGTACAAAAGTGGAGAGATGCTTTAGAAAAAGTTGCTACTTTATCTGGTTGGGACTCAAAAGATCGGTATGAAAGCGAATTCATTGAAAGCATTGTTGAAGAAATGGGGTCAAAGTTACTTGATAAATCAGCATCTGGTCATGGCAAGTTAATTGGAATTGGACCAAAATTAGACAAACTGAAGTCAATCGTTGCAAGTGAATCAGAAGGAGTTGGGTTTATAGGAATATGGGGCACAGGAGGTGTAGGCAAAACAACTCTTGCTAGAGCCTTTTATGAGCAAGAGCGAGAGCGCAAAAACTTTGAGATTCACTGCTTCCTTGATAATATTAGAGAGGCATGGGAAAAAGAAGGTTTGATTTCATTGCCAAGAAAACTTCTTTCTTCTCTAGATAAAAAGAGTATGGAAGTGGCTGACTTTTATGAAGGAATGGAGTTAATAAAAAGCAAGTTGACTGACAGAAAAATTCTACTTGTCCTTGACGATGTGAGTGATATTAGGCAACTTGAAAATTTGGCTCCAAAGAAAGGATGGTTCAGCGAAGGGAGCATAATAATAATAACAACTAGGGATAAGCATTTGTTATCATCACACAGTGTATCTGCTGTGTATGAATTCAAATTATTGAGTTATAACGAGTCCCTTGAACTTTTCCTTGAAAAAGCTTTTAAAGAAGAGCATCCTAATGAAGATTATTTGAAACTTGCTAGAACCGTCATTGAGTATGCTAGAGGCCTTCCTTTAGTGCTCACAGTGTTAGGTTCATCTCTTTGCAAAAGACCTATAGTGGAATGGAAGGATGAACTAGCTAAGCTCAAGAAAATTCCTCCAAAGGACATTTTGAAGATACTTCAGGTGAGTTTTGATGGACTGGATGATCAGCAGAAAACCATATTCCTGGATGTTGCTTGCTTTTTCAATGGGATGGACAAAGATCATGTCATACAAATTTTAGAAACTTTGGATAAGGATTTTCGCCCAGAAACTGAGATAAATGTTCTCATTAAGAAATCACTAATGATTAGTTATGAAGGGCATTTGTGGGTGCATCAAATTCTCCAAGATATGTGTAAATATATTGTCTATCAAGAATCACATTATGATGCTGGCAAGCGTTCCAGGATATTGTCTTTGGAGGATGCCAATCAAGGGACAGAAGCAATTCGAGGAATAGCGCTAACATTGGAAAAGTCATGTGATGCATTCTGGGATCCTGAATCCTTCTCAAAGATGATCTCTCCCAAGCCTAAAGTCCCTCGATCTATCTCATTCAAAATGCCTCGTCAAAGTCCCAAATTTTGA 1746 0.3797 MARDADGVGCSSSSSGSTKRRKYHVFLSFRGEDTRKNFSDHLYAALKRKGLKTFRDEEELERGESINPSLVQAIEESRSAIVVLSPNYASSTWCLDELQKILQLKEKTSFQVFPIFYGVDPSDVRKQKGSFAEAFRKHEERFTENKRKVQKWRDALEKVATLSGWDSKDRYESEFIESIVEEMGSKLLDKSASGHGKLIGIGPKLDKLKSIVASESEGVGFIGIWGTGGVGKTTLARAFYEQERERKNFEIHCFLDNIREAWEKEGLISLPRKLLSSLDKKSMEVADFYEGMELIKSKLTDRKILLVLDDVSDIRQLENLAPKKGWFSEGSIIIITTRDKHLLSSHSVSAVYEFKLLSYNESLELFLEKAFKEEHPNEDYLKLARTVIEYARGLPLVLTVLGSSLCKRPIVEWKDELAKLKKIPPKDILKILQVSFDGLDDQQKTIFLDVACFFNGMDKDHVIQILETLDKDFRPETEINVLIKKSLMISYEGHLWVHQILQDMCKYIVYQESHYDAGKRSRILSLEDANQGTEAIRGIALTLEKSCDAFWDPESFSKMISPKPKVPRSISFKMPRQSPKF 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5288g00001 581 Pfam TIR domain 22 193 IPR000157 GO:0007165
Pral5288g00001 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 449 IPR027417 -
Pral5288g00001 581 SMART till_3 22 162 IPR000157 GO:0007165
Pral5288g00001 581 Gene3D - 356 440 IPR042197 -
Pral5288g00001 581 Gene3D - 190 350 IPR027417 -
Pral5288g00001 581 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 165 IPR035897 -
Pral5288g00001 581 SUPERFAMILY "Winged helix" DNA-binding domain 427 513 IPR036390 -
Pral5288g00001 581 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 542 IPR044974 GO:0006952
Pral5288g00001 581 Pfam NB-ARC domain 214 423 IPR002182 GO:0043531
Pral5288g00001 581 PRINTS Disease resistance protein signature 221 236 - -
Pral5288g00001 581 PRINTS Disease resistance protein signature 391 405 - -
Pral5288g00001 581 PRINTS Disease resistance protein signature 298 312 - -
Pral5288g00001 581 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Pral5288g00001 581 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Pral5288g00001 581 Gene3D - 15 189 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5288g00001 Pral-Chr5288 23841 26995 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5288g00001 21 561 WRKY Transcription Factor Family AT4G12020 29.114 1.31e-51 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5288g00001 - - pcin:129318967 688.337