Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5287g00001 ATGGCGCATGATGCTGACGGAGTTGGGTGCTCTTCAAGTTCTTCTGGTTCAACCAAGAGAAGGAAGTATCATGTGTTTTTGAGTTTTCGAGGGGAAGATACTCGGAAAAATTTTACTGATCATTTGTATGCTGCTTTAAAATGCAAAGGATTAAAAACTTTCAGGGATGAAGAAGAACTTGAAAGGGGAGAATCTATTAATCCAAGTTTAATACAAGCAATTGAAGAGTCTCGTTCTGCAATTGTTGTGCTCTCCCCAAATTATGCTTCTTCAACTTGGTGTTTGGATGAGCTTCAAAAGATTCTGCAGTTAAAAGAAAAGACAAGTCTTCAAGTATTTCTCATATTTTACGGCGTAGATCCTTCTGATGTTAGGAAACAAAAAGGAAGTTTTGCAGAAGCATTCAGAAAGCATGAAGAAAGATTTGCCAAAAACAAAATAAAGGTGCAAAAGTGGAGAGATGCTTTAGAAAAAGTAGCTACTTTATCTGGTTGGGACTCAAAAGATCGGTATGAAAGCGAATTCATTGAAAGCATTGTTGAAGAAATGGGGTCAAAGTTACTTGATAAATCAGCATTTGGTCATGGCAAGTTAATTGGAATTGGACCAAAATTAGACAAACTGAAGTCAATCGTTGCAAGTGAATCAGAAGGAGTTGGGTTTATAGGAATATGGGGCACAGGAGGTGTAGGCAAAACAACTCTTGCTAGAGCCTTTTATGAGCAGGAGCGAGAGCGCAAAAACTTTGAGATTCACTGCTTCCTTGATAATATTAGAGAGGCATGGGAAAAAGAAGGTTTGATTTCATTGCCAAGAAAACTTCTTTCTTCTCTAGATAAAAAGAGTATGGAAGTGGCTGACTTTTATGAAGGAATGGAGTTAATAAAAAGCAAGTTGACTGACAGAAAAATTCTACTTGTCCTTGACGATGTGAGTGATATTAGGCAACTTGAAAATTTGGCTCCAAAGAAAGGATGGTTCAGAGAAGGGAGCATAATAATAATAACAACTAGGGATAAGCATTTGTTATCATTACATAGTGTATCTGCTGTGTATGAATTCAAATTATTGAGTTATAACGAGTCCCTTGAACTTTTCCTTGAAAAAGCTTTTAAAGAAGAGCATCCTAATGAAGATTATTTGAAACTTGCTAGAACCGTCATTGAGTATGCTAGAGGCCTTCCTTTAGTGCTCATAGTGTTAGGTTCATCTCTTTGCAAAAGACCTATAGTGGAATGGAAGGATGAACTAGCTAAGCTCAAGAAAATTCCTCCAAAGGACATTTTGAAGATACTTCAGGTGAGTTTTGATGGACTGGATGATCAGCAGAAAACCATATTCCTGGATGTTGCTTGCTTTTTCAATGGGATGGACAAAGATCATGTCATACAAATTTTAGAAACTTTGGATAAGGATTTTCGCCCAGAAACTGAGATAAATGTTCTCATTAAGAAATCACTAATGATTAGTTATGAAGGGCATTTGTGGGTGCATCAATCTCTCCCAAGCCTAAAGTCCCTCGATCTATCTCATTCAAAATGCCTCGTCAAAGTCCCAAATTTTGATGGAATTCCTCATCTTGAAAAGTTGATTCTTGAAGGGTGTTCTAACTTGGTTGAAATTCCCCACTCTCTTGGGCAACACAAGAAACTTGTCATTGTTGACTTGAAAGATTGCAAAGAAGTTAAAACGCTTCCAGAAAAATTTGAGATGAATAGCTTGGAGACTTTTATTCTATCGGGTTGTTCAAAAGTTAAGAAACTTCCTGAGTTTGGAAAAGATATGGCATGTCTATCGAAGCTTGATTTAGAGAAGACTGCTCTAGCCAAACTACCTCAATCGTTGGGTAATTTGATTGGTCTCGTTGAATTAAATTTGACAAACTGCAAAAAGCTGGTTTGTCTTCCATGTAGTGTTAGCAAGTTGAAAGCTCTGAAAGTTATCAAAATTTCTAAATGCTCAAAGCTTTCATGGCTGCCAGAGAATTTGAATGAAAATGAAGCTTTGGAAAAGCTGGATTTGAGTGGGATTGCTATACAAGGGTTATCATTTAGTGACTACAATAGCGAAACACAATCTTCATCATCATGGAGTTGCTTATCCGTTCTTCAAAGGCCTTCAAGCTCCAAAAAGTTTTTGTTGCCGCCGTCTTTGTCATCTAACGGGATACGATTTCATTGA 2181 0.3723 MAHDADGVGCSSSSSGSTKRRKYHVFLSFRGEDTRKNFTDHLYAALKCKGLKTFRDEEELERGESINPSLIQAIEESRSAIVVLSPNYASSTWCLDELQKILQLKEKTSLQVFLIFYGVDPSDVRKQKGSFAEAFRKHEERFAKNKIKVQKWRDALEKVATLSGWDSKDRYESEFIESIVEEMGSKLLDKSAFGHGKLIGIGPKLDKLKSIVASESEGVGFIGIWGTGGVGKTTLARAFYEQERERKNFEIHCFLDNIREAWEKEGLISLPRKLLSSLDKKSMEVADFYEGMELIKSKLTDRKILLVLDDVSDIRQLENLAPKKGWFREGSIIIITTRDKHLLSLHSVSAVYEFKLLSYNESLELFLEKAFKEEHPNEDYLKLARTVIEYARGLPLVLIVLGSSLCKRPIVEWKDELAKLKKIPPKDILKILQVSFDGLDDQQKTIFLDVACFFNGMDKDHVIQILETLDKDFRPETEINVLIKKSLMISYEGHLWVHQSLPSLKSLDLSHSKCLVKVPNFDGIPHLEKLILEGCSNLVEIPHSLGQHKKLVIVDLKDCKEVKTLPEKFEMNSLETFILSGCSKVKKLPEFGKDMACLSKLDLEKTALAKLPQSLGNLIGLVELNLTNCKKLVCLPCSVSKLKALKVIKISKCSKLSWLPENLNENEALEKLDLSGIAIQGLSFSDYNSETQSSSSWSCLSVLQRPSSSKKFLLPPSLSSNGIRFH 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5287g00001 726 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Pral5287g00001 726 Pfam NB-ARC domain 214 423 IPR002182 GO:0043531
Pral5287g00001 726 Gene3D - 197 351 IPR027417 -
Pral5287g00001 726 SMART till_3 22 162 IPR000157 GO:0007165
Pral5287g00001 726 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 502 653 IPR044974 GO:0006952
Pral5287g00001 726 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Pral5287g00001 726 Gene3D - 357 440 IPR042197 -
Pral5287g00001 726 PRINTS Disease resistance protein signature 499 515 - -
Pral5287g00001 726 PRINTS Disease resistance protein signature 298 312 - -
Pral5287g00001 726 PRINTS Disease resistance protein signature 221 236 - -
Pral5287g00001 726 PRINTS Disease resistance protein signature 391 405 - -
Pral5287g00001 726 Gene3D - 17 192 IPR035897 -
Pral5287g00001 726 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 165 IPR035897 -
Pral5287g00001 726 Pfam TIR domain 22 191 IPR000157 GO:0007165
Pral5287g00001 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 449 IPR027417 -
Pral5287g00001 726 SUPERFAMILY L domain-like 493 684 - -
Pral5287g00001 726 Gene3D Ribonuclease Inhibitor 471 724 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5287g00001 Pral-Chr5287 23038 28779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5287g00001 466 680 WRKY Transcription Factor Family AT5G45050 29.114 2.25e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5287g00001 - - pcin:129318967 632.869