Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5286g00018 ATGGCGCGTGATGCTGATGGAGTTGGGTGCTCTTCAAGTTCTTCTGGTTCAACTAAGAGAAGGAAGTATCATGTGTTTTTGAGCTTTCGAGGGGAAGATACACGGAAAAATTTTTCTGATCATTTGTATGCCGCTTTAAAACGCAAAGGATTAAAAACTTTCAGGGATGAAGAAGAACTTGAAAGGGGAGAATCTATTAATCCAAGTTTAGTACAAGCAATTGAAGAGTCTCGTTCTGCAATTGTTGTGCTCTCCCCAAATTATGCTTCTTCAACTTGGTGTTTGGATGAGCTTCAAAAGATCCTGCAGTTAAAGGAAGAGACGAGTTTTCAAGTATTTCCGATATTTTACGGTGTAGATCCTTCTGATGTTAGGAAACAAAAGGGAAGTTTTGCAGAAGCATTCAGAAAGCATGAAGAAAGATTTACCGAAAACAAAAGAAAGGTACAAAAGTGGAGAGATGCTTTAGAAAAAGTTGCTACTTTATCTGGTTGGGACTCAAAAGATCGGTATGAAACAGAATTCATTGAAAGCATTGCTGAAGAAATGGGGTCAAAGTTACTTGATAAATCAGCATCTGGTCATGGCAAGTTAATTGGAATTGAACCAAAATTAGATGAATTGAAGTCAATTGTAGCAAGGGAATCAAAAGGAATTGGGTTTATAGGAATATGGGGCACAGGAGGCGTAGGCAAAACAACTCTTGCTAGAGCCTTTTATGAGCGGAAGCGAGAGCACAAAAACTTTGAGATTCACTGCTTCCTTGATAATATTAGAGAGGCATGGGAAAAAGAAGGTTTGATTTCATTGCCAAGAAAACTTCTTTCTTCTCTAGAAAAAAAGAGTATGGAAGTGGCTGATTTTTATGAAGGAATGGGGTTAATAAAGAGAAAGTTGACTGACAAAAAAATTCTACTTGTCCTTGATGATGTGAGTGATATTAGGCAACTTGAAAATTTGGCTCCAAAGCAAGGATGGTTCAGTGAAGGGAGCATAATAATAATAACAACTAGGGACAGGCATTTGTTATCATCACATGGTGTATCTGCTGTGTATGAATTCAAATTATTGAGTGATAACGAGTCCCTTGAACTTTTCCTTGAAAAAGCTTTTAAAGAAGAGCATCCTAATGAAGATTATTTGAAACTTGCTAGAACTGTCATTAAGTATGCTGGAGGCCTTCCTTTAGTGCTCACAGTGTTAGGTTCATCTCTTTGCAAAAGAACTATAGTGGAATGGAAAGATGAACTAGCTAAGTTCAAGAAAGTTCCTCCAAAGGACATTTTGAAGATACTTCAAGTGAGTTTTGATGGACTGGATGATCAGGAAAAAACCATATTCTTGGATATTGCTTGCTTTTTCAATGGGATGGACAAAGATCATGTCATACAAATTTTAGAAACTTTGGAGAAGGATCTTCACCCAGAAACTGGGATAAATGTTCTCATTAAGAGATCACTAATAACTAATTATGAAGGGCATTTGTGGGTGCATGAAATTCTCCAAGATATGGGAAAATATATTGTTTATCAAGAATCACCTTATGACGCCGGCAAGCGTTCAAGGATATTGTCTTTGGAGGATGCCAATCATGTACTAAAAAGAAATAAGGGGACAGAAGCAACTCGAGGAATGGCCCTAACATTGGAAAAGTCATGTGATGCATTTTGGGATCCTGAAGCCTTCTCAAAGATGAGTAATCTCAGGTTACTTATCATTTCAAGTCGCTCACATGTTTCACATTGCCAATTAAATCTTCCGCATGGGCTCAAGACCCTTTCCAGCGAGTTGAAAGTCATAGAATGGGTGGGGTATCCATTATTTTATTTGCCTAGTCAGCCTCAACTCCATGAACTTGTAGTACTAAAAATGCAACATAGCAAATTAAAAGAACTTTGGAGAGGAACACAGCCTCTCCCAAGCCTAAAGTCTCTTGATCTATCTCATTCAAAATACCTCATCAAAACCCCAAATTTTGATGGAATTCCTCATCTTGAAAAGTTGATTCTTGAAGGGTGTTCTAACTTGGTTAAAATTCACCAGTCTCTTGGGCAACACAAGAAACTTGTCATTGTTGACTTGAAAGATTGCAAAGAAGTTAAAACCCTTCCAGAAAAATTTGAGATGAATAGTTTGGAGACTTTTATTCTATCGGGTTGTTCAAAAGTTAGAAAACTTCCTGAGTTTGGAAAAGATATGGCATGTCTATCGAAGCTTGATTTAGAGAAGACTGCTCTAGCCAAACTACCTCAATCGTTGGGTAATTTGATTGGTCTCGTTGAATTAAATTTGACAAACTGCAAAAAGCTGGTTTGTCTTCCATGTAGTGTTAGCAAGTTGAAAGCTCTGAAAGTTATCAAAATTTCTGAATGCTCAAAGCTTTCATGGCTGCCAGAGAGTTTGAATGAAAATGAAGCTTTGGAACAGCTTCATTTGAGTGGGATTGCTATACAAGGGTTATCATTTAGTGACTACAATAGCGAAACACAATCTTCATCATCATGGAGTTGCTTATCCCTTCTTCAAAGGCCTTCAAGCTCCAAAAAGTTTTTGTTGCCACCGTCTTTGTCACTATTGAGCGAATTGCATTTAGATTTTTGCAAACTCCATGATGGATCACTTCCCGATGTCATGAATGAGTTATCATCATTGCAAGTTTTAAATCTAAGTGGAAACAATTTTATTGACGTACCATCTGGCCTTATTTTCAATCTTTCAAAGCTTAGGGCTATTGCCCTCGCTTATTGCCCAAGGCTTCAGTCTTGGCCACAATTTCCTTCAAATTTGTCATTTATAATTGCAAATGGTTGTTCATCAATGAAATATTGCAGAAGTTCACGGCATGATGGGATTTCATTGGATCATTTCAACCCCAGGTTCGCAACCATTTGA 2892 0.3762 MARDADGVGCSSSSSGSTKRRKYHVFLSFRGEDTRKNFSDHLYAALKRKGLKTFRDEEELERGESINPSLVQAIEESRSAIVVLSPNYASSTWCLDELQKILQLKEETSFQVFPIFYGVDPSDVRKQKGSFAEAFRKHEERFTENKRKVQKWRDALEKVATLSGWDSKDRYETEFIESIAEEMGSKLLDKSASGHGKLIGIEPKLDELKSIVARESKGIGFIGIWGTGGVGKTTLARAFYERKREHKNFEIHCFLDNIREAWEKEGLISLPRKLLSSLEKKSMEVADFYEGMGLIKRKLTDKKILLVLDDVSDIRQLENLAPKQGWFSEGSIIIITTRDRHLLSSHGVSAVYEFKLLSDNESLELFLEKAFKEEHPNEDYLKLARTVIKYAGGLPLVLTVLGSSLCKRTIVEWKDELAKFKKVPPKDILKILQVSFDGLDDQEKTIFLDIACFFNGMDKDHVIQILETLEKDLHPETGINVLIKRSLITNYEGHLWVHEILQDMGKYIVYQESPYDAGKRSRILSLEDANHVLKRNKGTEATRGMALTLEKSCDAFWDPEAFSKMSNLRLLIISSRSHVSHCQLNLPHGLKTLSSELKVIEWVGYPLFYLPSQPQLHELVVLKMQHSKLKELWRGTQPLPSLKSLDLSHSKYLIKTPNFDGIPHLEKLILEGCSNLVKIHQSLGQHKKLVIVDLKDCKEVKTLPEKFEMNSLETFILSGCSKVRKLPEFGKDMACLSKLDLEKTALAKLPQSLGNLIGLVELNLTNCKKLVCLPCSVSKLKALKVIKISECSKLSWLPESLNENEALEQLHLSGIAIQGLSFSDYNSETQSSSSWSCLSLLQRPSSSKKFLLPPSLSLLSELHLDFCKLHDGSLPDVMNELSSLQVLNLSGNNFIDVPSGLIFNLSKLRAIALAYCPRLQSWPQFPSNLSFIIANGCSSMKYCRSSRHDGISLDHFNPRFATI 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5286g00018 963 SMART till_3 22 162 IPR000157 GO:0007165
Pral5286g00018 963 Gene3D - 15 189 IPR035897 -
Pral5286g00018 963 SUPERFAMILY "Winged helix" DNA-binding domain 427 534 IPR036390 -
Pral5286g00018 963 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 805 IPR044974 GO:0006952
Pral5286g00018 963 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 165 IPR035897 -
Pral5286g00018 963 Gene3D Ribonuclease Inhibitor 819 953 IPR032675 -
Pral5286g00018 963 Gene3D Ribonuclease Inhibitor 709 818 IPR032675 -
Pral5286g00018 963 Pfam TIR domain 22 193 IPR000157 GO:0007165
Pral5286g00018 963 PRINTS Disease resistance protein signature 637 653 - -
Pral5286g00018 963 PRINTS Disease resistance protein signature 391 405 - -
Pral5286g00018 963 PRINTS Disease resistance protein signature 298 312 - -
Pral5286g00018 963 PRINTS Disease resistance protein signature 221 236 - -
Pral5286g00018 963 Pfam Leucine Rich Repeat 619 637 IPR011713 -
Pral5286g00018 963 SUPERFAMILY L domain-like 557 933 - -
Pral5286g00018 963 Pfam NB-ARC domain 208 423 IPR002182 GO:0043531
Pral5286g00018 963 Gene3D - 356 440 IPR042197 -
Pral5286g00018 963 Gene3D - 190 350 IPR027417 -
Pral5286g00018 963 SMART LRR_typ_2 733 756 IPR003591 -
Pral5286g00018 963 SMART LRR_typ_2 881 904 IPR003591 -
Pral5286g00018 963 SMART LRR_typ_2 616 638 IPR003591 -
Pral5286g00018 963 Gene3D Ribonuclease Inhibitor 533 708 IPR032675 -
Pral5286g00018 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 450 IPR027417 -
Pral5286g00018 963 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Pral5286g00018 963 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5286g00018 Pral-Chr5286 187994 215286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5286g00018 21 823 WRKY Transcription Factor Family AT4G12020 31.540 1.80e-96 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5286g00018 - - pcin:129318967 1174.46