Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5286g00013 ATGGTGATGATGCGGGATCTCAGGGAGCATAGCAAGAAGAAAAAAAGAGGCCAGCGTGCTGTTGGAGGTGACAAGAGTGGAAGAGGGCTCCGCCAATTTAGCATGAAAGTGTGTGAAAAGGTGGAAAGTAAGGGGAGAACCACTTACAATGAGGTTGCAGATGAACTTGTGGCTGAATTTGCTGACCCGAGTAGTAGCATTTCATCTCCTGATCAGCAACAATATGATGAGAAGAACATTCGTCGAAGGGTTTATGATGCTTTGAATGTTCTGATGGCAATGGATATAATTTCCAAGGATAAAAAGGAAATTCAATGGAAGGGTCTCCCTCGTACAAGTCTGAATGATATTGAAGAATTAAAGACGGAGCGCCTTCAGCTTAGGAATCGGATTGAAAAGAAAGCTGCCTACCTGCAGGAGCTGGAGGAGCAATACATAGGTCTTCAGAATCTCATACAACGAAATGAGCAATTATATGGCTCAGGAAATGCTCCCAGTGGAGGTGTGTCCTTACCTTTTATTCTTGTACAGACTCGCCCACATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAATAGCACTCCGTTTGAGCTGCATGATGACAACTATGTCCTCAAGGCAATGAAATTTTGTGAGAGACCGCAGAGTGATAATATGACGCAGAATCTTGTGGACGGGGGTGAAGGTTCTAGCATGTCAGGCTTGTATCAGGCGCAGGTCACTCCTTCAGTGTCAAACCAACCGGTCAGAACTCCAACCTCGCCGCCTCTTCCTGGGATATTGAAGGCAAGAGTTAAGCATGAGCATTGA 834 0.4472 MVMMRDLREHSKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSISSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLQLRNRIEKKAAYLQELEEQYIGLQNLIQRNEQLYGSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDNMTQNLVDGGEGSSMSGLYQAQVTPSVSNQPVRTPTSPPLPGILKARVKHEH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5286g00013 277 SMART DP_2 115 275 IPR014889 -
Pral5286g00013 277 PANTHER TRANSCRIPTION FACTOR DP 10 251 IPR015648 GO:0005667|GO:0051726
Pral5286g00013 277 SUPERFAMILY E2F-DP heterodimerization region 114 229 IPR037241 -
Pral5286g00013 277 SUPERFAMILY "Winged helix" DNA-binding domain 28 109 IPR036390 -
Pral5286g00013 277 Pfam Transcription factor DP 116 230 IPR014889 -
Pral5286g00013 277 CDD DP_DD 113 216 IPR014889 -
Pral5286g00013 277 PIRSF Txn_factor_DP 3 277 IPR015648 GO:0005667|GO:0051726
Pral5286g00013 277 Gene3D - 20 113 IPR036388 -
Pral5286g00013 277 FunFam Transcription factor-like protein DPB 114 238 - -
Pral5286g00013 277 FunFam Transcription factor-like protein DPB 20 113 - -
Pral5286g00013 277 Coils Coil 117 158 - -
Pral5286g00013 277 SMART E2F_TDP_2 25 108 IPR003316 GO:0005667|GO:0006355
Pral5286g00013 277 Gene3D Transcription factor DP 114 246 IPR038168 -
Pral5286g00013 277 Pfam E2F/DP family winged-helix DNA-binding domain 28 108 IPR003316 GO:0005667|GO:0006355
Pral5286g00013 277 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5286g00013 Pral-Chr5286 159243 165495 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5286g00013 26 217 E2F-DP Transcription Factor Family AT5G02470 56.477 4.80e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral5286g00013 DP 1.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5286g00013 K04683 - zju:107414839 493.426