Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5286g00012 ATGGTGATGATGCGGGATCTCAGGGAGCACAAGAAGAAAAAAAGAGGCCAGCGTGCTGTTGGAGGTGACAAGAGTGGAAGAGGGCTCCGCCAATTTAGCATGAAAGTGTGTGAAAAGGTGGAAAGTAAGGGGAGAACCACTTACAATGAGGTTGCAGATGAACTTGTGGCTGAATTTGCTGACCCGAGTAGTAGCATTTCATCTCCTGATCAGCAACAATATGATGAGAAGAACATTCGTCGAAGGGTTTATGATGCTTTGAATGTTCTGATGGCAATGGATATAATTTCCAAGGATAAAAAGGAAATTCAATGGAAGGGTCTCCCTCGTACAAGTCTGAATGATATTGAAGAATTAAAGACGGAGCGCCTTCAGCTTAGGAATCGGATTGAAAAGAAAGCTGCCTACCTGCAGGAGCTGGAGGAGCAATACATAGGTCTTCAGAATCTCATACAACGAAATGAGCAATTATATGGCTCAGGAAATGCTCCCAGTGGAGGTGTGTCCTTACCTTTTATTCTTGTACAGACTCGCCCACATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAATAGCACTCCGTTTGAGCTGCATGATGACAACTATGTCCTCAAGGCAATGAAATTTTGTGAGAGACCGCAGAGTGATAATATGACGCAGAATCTTGTGGACGGGGGTGAAGGTTCTAGCATGTCAGGCTTGTATCAGGCGCAGGTCACTCCTTCAGTGTCAAACCAACCGGTCAGAACTCCAACCTCGCCGCCTCTTCCTGGGATATTGAAGGCAAGAGTTAAGCATGAGCATTGA 831 0.4477 MVMMRDLREHKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSISSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLQLRNRIEKKAAYLQELEEQYIGLQNLIQRNEQLYGSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDNMTQNLVDGGEGSSMSGLYQAQVTPSVSNQPVRTPTSPPLPGILKARVKHEH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5286g00012 276 Gene3D Transcription factor DP 113 245 IPR038168 -
Pral5286g00012 276 FunFam Transcription factor-like protein DPB 19 112 - -
Pral5286g00012 276 MobiDBLite consensus disorder prediction 248 276 - -
Pral5286g00012 276 Pfam Transcription factor DP 115 229 IPR014889 -
Pral5286g00012 276 FunFam Transcription factor-like protein DPB 113 237 - -
Pral5286g00012 276 Gene3D - 19 112 IPR036388 -
Pral5286g00012 276 Pfam E2F/DP family winged-helix DNA-binding domain 27 107 IPR003316 GO:0005667|GO:0006355
Pral5286g00012 276 SUPERFAMILY E2F-DP heterodimerization region 113 228 IPR037241 -
Pral5286g00012 276 PANTHER TRANSCRIPTION FACTOR DP 9 250 IPR015648 GO:0005667|GO:0051726
Pral5286g00012 276 SMART E2F_TDP_2 24 107 IPR003316 GO:0005667|GO:0006355
Pral5286g00012 276 SUPERFAMILY "Winged helix" DNA-binding domain 27 108 IPR036390 -
Pral5286g00012 276 CDD DP_DD 112 215 IPR014889 -
Pral5286g00012 276 PIRSF Txn_factor_DP 3 276 IPR015648 GO:0005667|GO:0051726
Pral5286g00012 276 MobiDBLite consensus disorder prediction 1 25 - -
Pral5286g00012 276 Coils Coil 116 157 - -
Pral5286g00012 276 SMART DP_2 114 274 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5286g00012 Pral-Chr5286 159243 165495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5286g00012 2 216 E2F-DP Transcription Factor Family AT5G02470 52.778 4.30e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral5286g00012 DP 1.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5286g00012 K04683 - zju:107414839 491.886