Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5286g00009 ATGGGGACACGACCTCAGCAACCATGTCGAGAGGAAGAGGAAGATGAGCTGCTAGGTCGTGGAACAACACTTTCTGGCCAATCAATTTCTACAAGTAAAAGTGTTGGGTCTCCATCCAGTCGGAGTGAGCAGACAATGGCTACACCAGCCAGTGATAACACTTTTCTAAGACTAAATCATCTTGACATCCATGGTGATGATGCGGGATCTCAGGGAGCAGTTGCCAAGAAGAAAAAAAGAGGCCAGCGTGCTGTTGGAGGTGACAAGAGTGGAAGAGGGCTCCGCCAATTTAGCATGAAAGTGTGTGAAAAGGTGGAAAGTAAGGGGAGAACCACTTACAATGAGGTTGCAGATGAACTTGTGGCTGAATTTGCTGACCCGAGTAGTAGCATTTCATCTCCTGATCAGCAACAATATGATGAGAAGAACATTCGTCGAAGGGTTTATGATGCTTTGAATGTTCTGATGGCAATGGATATAATTTCCAAGGATAAAAAGGAAATTCAATGGAAGGGTCTCCCTCGTACAAGTCTGAATGATATTGAAGAATTAAAGACGGAGCGCCTTCAGCTTAGGAATCGGATTGAAAAGAAAGCTGCCTACCTGCAGGAGCTGGAGGAGCAATACATAGGTCTTCAGAATCTCATACAACGAAATGAGCAATTATATGGCTCAGGAAATGCTCCCAGTGGAGGTGTGTCCTTACCTTTTATTCTTGTACAGACTCGCCCACATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAATAGCACTCCGTTTGAGCTGCATGATGACAACTATGTCCTCAAGGCAATGAAATTTTGTGAGAGACCGCAGAGTGATAATATGACGCAGAATCTTGTGGACGGGGGTGAAGGTTCTAGCATGTCAGGCTTGTATCAGGCGCAGGTCACTCCTTCAGTGTCAAACCAACCGGTCAGAACTCCAACCTCGCCGCCTCTTCCTGGGATATTGAAGGCAAGAGTTAAGCATGAGCATTGA 1026 0.4522 MGTRPQQPCREEEEDELLGRGTTLSGQSISTSKSVGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAVAKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSISSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLQLRNRIEKKAAYLQELEEQYIGLQNLIQRNEQLYGSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDNMTQNLVDGGEGSSMSGLYQAQVTPSVSNQPVRTPTSPPLPGILKARVKHEH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5286g00009 341 Gene3D Transcription factor DP 178 309 IPR038168 -
Pral5286g00009 341 PIRSF Txn_factor_DP 5 341 IPR015648 GO:0005667|GO:0051726
Pral5286g00009 341 Gene3D - 84 177 IPR036388 -
Pral5286g00009 341 Coils Coil 181 222 - -
Pral5286g00009 341 Pfam Transcription factor DP 180 294 IPR014889 -
Pral5286g00009 341 PANTHER TRANSCRIPTION FACTOR DP 23 314 IPR015648 GO:0005667|GO:0051726
Pral5286g00009 341 SMART E2F_TDP_2 89 172 IPR003316 GO:0005667|GO:0006355
Pral5286g00009 341 FunFam Transcription factor-like protein DPB 178 302 - -
Pral5286g00009 341 Pfam E2F/DP family winged-helix DNA-binding domain 92 172 IPR003316 GO:0005667|GO:0006355
Pral5286g00009 341 CDD DP_DD 177 280 IPR014889 -
Pral5286g00009 341 SMART DP_2 179 339 IPR014889 -
Pral5286g00009 341 MobiDBLite consensus disorder prediction 21 55 - -
Pral5286g00009 341 SUPERFAMILY E2F-DP heterodimerization region 178 293 IPR037241 -
Pral5286g00009 341 MobiDBLite consensus disorder prediction 1 92 - -
Pral5286g00009 341 FunFam Transcription factor-like protein DPB 84 177 - -
Pral5286g00009 341 SUPERFAMILY "Winged helix" DNA-binding domain 92 173 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5286g00009 Pral-Chr5286 159243 165498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5286g00009 90 290 E2F-DP Transcription Factor Family AT5G02470 55.446 1.07e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral5286g00009 DP 1.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5286g00009 K04683 - zju:107414839 590.112