Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5285g00021 ATGGAGGGTCCTCCTTCCAGCGATTTTTGTTCCGTGTGCCATGGAGACTACAACAATCCTTGCCAAGCCAATTGCTCTCACTGGTTTTGCGGAAGATGTATTATGCAAGTGTGGCACCATGGATCTACTGTCAGGCCATGCAGATGCCCCTTATGTCGCCGTCAAATTACATTGCTGGTTCCAACTGAGGACTTTTTAAGGCAGCGTTATGACCCTGAAGTTGCTGAGGTTCTACAAGGTATTGAAGCATACAATCGTCTGTTTGGTGGTCAGGCAACTGGTCTGCTTCAGAGAATGCAAGATCTTCCTTTTCTCTTGCGAAGGCTACTGAGGGAGCTGATGGATCCTCACAGATCACTTCCTCTTGTCATTAAGGCTCGTGTCTATATGGCAATGATATCAAGTGTTGTTTACATTGTAAGCCCTGTTGACATTATTCCCGAAGCGATGTTGGGAATATTTGGTTTGTTGGATGATCTCCTTGTTGCGCTCCTCTGCTTCCTCTATGTTGCTTCTCTTTACAGATCGTTGCTCTATTTCCGTCATGGGGGCTCTCGTGTCTGA 564 0.4645 MEGPPSSDFCSVCHGDYNNPCQANCSHWFCGRCIMQVWHHGSTVRPCRCPLCRRQITLLVPTEDFLRQRYDPEVAEVLQGIEAYNRLFGGQATGLLQRMQDLPFLLRRLLRELMDPHRSLPLVIKARVYMAMISSVVYIVSPVDIIPEAMLGIFGLLDDLLVALLCFLYVASLYRSLLYFRHGGSRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5285g00021 187 SMART ring_2 10 52 IPR001841 -
Pral5285g00021 187 CDD RING-HC_RNF113A_B 10 61 - -
Pral5285g00021 187 SUPERFAMILY RING/U-box 8 61 - -
Pral5285g00021 187 PANTHER UNCHARACTERIZED 2 182 IPR038896 GO:0061630
Pral5285g00021 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 101 IPR013083 -
Pral5285g00021 187 Pfam Protein of unknown function (DUF1232) 130 165 IPR010652 -
Pral5285g00021 187 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
Pral5285g00021 187 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5285g00021 Pral-Chr5285 416866 419436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5285g00021 35 185 C3H Transcription Factor Family AT1G72175 71.523 1.18e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5285g00021 K15707 - jre:109000985 288.885