Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5285g00011 ATGAATAGGGGAATTGAAGTTTTTTCTCCAGCCTCTTACCTTGAAAACTCGAATTGGTTGTTTCAAGAGAGCAAAGGAACGAAATGGACCCCAGAAGAGAATAAGCGGTTTGAGGACGCTTTGGCCTTGTACGACAAAGATACTCCAGATCGTTGGTTGAAAGTTGCAGCTAAGGTTCCAGGCAAGACAGTGGGAGATGTGATTAGGCAGTACAAACAACTTGAAGAAGATGTTAGTGTCATAGAGGCAGGGTTGATCCCAGTCACTGAGTATGATGATAGCAGTTCTTTCACTTTGGAATGGGCCAATAACCAAGGCTTTGAGGATCTCAAGCCATTCTATACTGTTGGTGAGAAAAGGGGTTCTTCCACTCGACCATCTGAGCAGGAAAGGAAAAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCAATTTCTGTTGGGCCTGAAGAAGTATGGTAAAGGGGACTGGAGAAACATATCTCGTAATTTTGTGACCACAAGGACTCCCACTCAGGTTGCTAGTCATGCTCAGAAGTATTTCATCCGGCAGCTTACTGGAGGCAAGGACAAGAGGAGATCAAGCATCCATGACATCACAATTGTCAACCTTGAAACCAAGTCATCATCTCCTGCATCATCAGACTGCAGTCACAGACCTTCTTCTCCTGATCGCTCAGTGAAGGCTGTGAATGATCTGCCTAAGAATCCAAATTTCTCTACCATGGTTAAACAGGAGTATGACTCAAAATTACCGTACGAGTCCCTGCCAATGATTTTCAATTCATCAAATGGAAACATGTTCATGCCACCCTATTTCGGGATCTCTTCAGTAGGATCTGGACCTCAGGAGCAGTGTTTACTCAGAGGTTCTCTCTAA 879 0.4471 MNRGIEVFSPASYLENSNWLFQESKGTKWTPEENKRFEDALALYDKDTPDRWLKVAAKVPGKTVGDVIRQYKQLEEDVSVIEAGLIPVTEYDDSSSFTLEWANNQGFEDLKPFYTVGEKRGSSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITIVNLETKSSSPASSDCSHRPSSPDRSVKAVNDLPKNPNFSTMVKQEYDSKLPYESLPMIFNSSNGNMFMPPYFGISSVGSGPQEQCLLRGSL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5285g00011 292 MobiDBLite consensus disorder prediction 118 137 - -
Pral5285g00011 292 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Pral5285g00011 292 Pfam Myb-like DNA-binding domain 28 74 IPR001005 -
Pral5285g00011 292 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Pral5285g00011 292 SMART sant 133 183 IPR001005 -
Pral5285g00011 292 SMART sant 25 77 IPR001005 -
Pral5285g00011 292 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Pral5285g00011 292 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Pral5285g00011 292 Gene3D - 135 185 - -
Pral5285g00011 292 MobiDBLite consensus disorder prediction 207 239 - -
Pral5285g00011 292 FunFam Transcription factor SRM1 21 88 - -
Pral5285g00011 292 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 240 IPR043363 -
Pral5285g00011 292 CDD SANT 28 74 IPR001005 -
Pral5285g00011 292 FunFam transcription factor MYB1R1 135 186 - -
Pral5285g00011 292 Gene3D - 21 88 - -
Pral5285g00011 292 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Pral5285g00011 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Pral5285g00011 292 CDD SANT 136 181 IPR001005 -
Pral5285g00011 292 MobiDBLite consensus disorder prediction 123 137 - -
Pral5285g00011 292 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Pral5285g00011 292 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5285g00011 Pral-Chr5285 356563 358955 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5285g00011 Myb_DNA-binding 3.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5285g00011 - - qsa:O6P43_026398 434.491