Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00080 ATGGAGTGGGACAGCAATTCCGATCTCAGCGGGGAGGAGGACGAGAGTTTCATGGTCACCGATGCTGGCCCTCTTCCCTTCCCCGTCGGGAACTTGCTCCAAACGGCGCCGTGTGGGATTGTCGTCACTGACGCACTCGATCCGGACCATCCTATTATATATGTCAATACGGTGTTCGAGATGGTCACTGGATATCGGGCAGAGGAAGTGCTTGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGCCCATATGCTAAGAGAAGGCATCCATTAGTGGACTCTGCAGTAGTTTCAGAAATTAGGAGATGCCTTGAGGAGGGGATCGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGTTGACACCTATATATGGGGATGATGAGACTATAACACATGTCATTGGAATTCAGCTCTTCGCAGAGGCAAACATTGATCTTGGTCCTGTTCCAGGTTCTACAATTAAGGAATCTGCCAAGTCATTTGATCCATTTCGTTCTTCTGCTCTTGCCTTGTTACGCCCTCTTCCATCAGGGGACCGTAATGTTTCCCGTGGAGTTTGTGGGATATTGCAGTTGAGCGATGAGGTTTTGTCTATGAAGATACTTTCTCGCTTAACTCCAAGAGATATTGCGTCAGTTGGCTCTGTTTGTAGGCGATTGTATGAGCTAACAAGAAATGAAGATCTTTGGAGAATGGTATGTCAAAATGCATGGGGAAGTGAAACCACACGTGTTTTAGAGACCGTGCCTGCTGCAAGAAGACTTGGATGGGGCAGGCTGGCAAGAGAATTGACAACTCTTGAAGCTGCAGCATGGAGAAAGTTGACTGTTGGGGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTGCTATTTGGTGGTGAAGGGGTTAACATGCAGCCCATGAATGACACCTTTGTATTAGATCTCAGTTCTAGTAATCCTGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCAGGTCGTTGGGGCCATACACTTTCTTGTGTTAATGGCTCTAATTTGGTTGTATTTGGAGGCTGTGGAACGCAGGGCTTGCTCAATGATGTGTTTGTGCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGCTTGGCACCACCACTTCCCAGATCATGGCATAGCTCCTGTACCCTTGATGGAACTAAGTTGATTGTTTCTGGTGGCTGTGCAGATTCTGGAGTGCTTTTGAGTGATACATTCCTGCTTGATCTGTCAATGGAGAAACCTGTTTGGAGAGAGATACCAGTCACATGGACTCCGCCTTCTCGTCTGGGTGCCACACTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCATTGCGGTTCCGCTCTAGTGATGTATTCACGATGGATTTGAGTGAAGAGGAGCCATGTTGGAGATGTGTTACTGGTAGTGGAATGCCTGGTTCTGGGAATCCTGGGGGCATAGCTCCTCCTCCCAGACTTGATCATGTGGCTGTCAGTCTTCCTGGCGGGAGAATTCTGGTTTTTGGAGGGTCTGTTGCAGGTCTTCATTCTGCCTCCCAGCTCTACATCCTGGACCCAACTGATGAGAAGCCTACTTGGAGAATCTTAAATGTACCAGGCCGTCCCCCGAGATTTGCTTGGGGACATAGCACTTGTGTTGTCGGAGGGACAAGAGCTATTGTACTGGGTGGTCAGACTGGAGAGGAGTGGATGCTAAGCGAACTTCATGAGCTGTCTCTGGCAAGTTCTGTGATCTAA 1836 0.488 MEWDSNSDLSGEEDESFMVTDAGPLPFPVGNLLQTAPCGIVVTDALDPDHPIIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPYAKRRHPLVDSAVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQLFAEANIDLGPVPGSTIKESAKSFDPFRSSALALLRPLPSGDRNVSRGVCGILQLSDEVLSMKILSRLTPRDIASVGSVCRRLYELTRNEDLWRMVCQNAWGSETTRVLETVPAARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLSSSNPEWQHVQVSSPPPGRWGHTLSCVNGSNLVVFGGCGTQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGATLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGSGNPGGIAPPPRLDHVAVSLPGGRILVFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00080 611 Gene3D - 195 243 - -
Pral5280g00080 611 Pfam Galactose oxidase, central domain 346 398 - -
Pral5280g00080 611 Pfam Galactose oxidase, central domain 295 345 - -
Pral5280g00080 611 CDD PAS 36 146 IPR000014 -
Pral5280g00080 611 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Pral5280g00080 611 Pfam Kelch motif 453 503 IPR011498 GO:0005515
Pral5280g00080 611 Gene3D - 480 610 IPR015915 GO:0005515
Pral5280g00080 611 FunFam Putative LOV domain-containing protein 272 476 - -
Pral5280g00080 611 FunFam Putative LOV domain-containing protein 477 610 - -
Pral5280g00080 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 26 608 - -
Pral5280g00080 611 Gene3D PAS domain 22 158 - -
Pral5280g00080 611 Gene3D - 274 475 IPR015915 GO:0005515
Pral5280g00080 611 ProSiteProfiles PAS repeat profile. 32 107 IPR000014 -
Pral5280g00080 611 Pfam F-box-like 208 245 IPR001810 GO:0005515
Pral5280g00080 611 NCBIfam PAS domain S-box protein 32 146 IPR000014 -
Pral5280g00080 611 FunFam Adagio protein 1 27 158 - -
Pral5280g00080 611 SUPERFAMILY Galactose oxidase, central domain 282 596 IPR011043 -
Pral5280g00080 611 CDD F-box_AtADO-like 198 244 - -
Pral5280g00080 611 Pfam PAS domain 37 146 IPR000014 -
Pral5280g00080 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 147 IPR035965 -
Pral5280g00080 611 SUPERFAMILY F-box domain 188 259 IPR036047 GO:0005515
Pral5280g00080 611 FunFam Adagio protein 1 196 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00080 Pral-Chr5280 730203 736215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00080 33 148 AGC Kinase Gene Family AT5G58140 40.517 8.04e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00080 K12115 - tcc:18589282 1154.04