Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00075 ATGCCGTATTTTCCTCCGTCTGGTTCTTGTGTGGCATGGTCAACGGCTGGGTCTATTGTCACAGCGGTGGTGGTTATAGCCATTATAGCAATAGCATATGCCGTTACTAAGTGCATGAAGAAAGCACCAACAACCCAGATTTCAACAACAGATCATGACAATAACATGCATTCTTCAAACAACAAGGAAATAGTGTTAGTAAAACCGCCAGATTCAGATTCACAGGTACTGGAGTTTGCAACCGTGGAAAGATTCCTCAACAACATCAACCGAGAGAAACCCATCAGATTCTCACCTGAGCAAATTGAAGAAATCACAGACAACTACACCACTGTTCTGGGGTCTGGTGCTTTTGGGGAGGTTTATAAAGGTGAATTGTCCAATGGACAGCAAGTTGCAGTGAAAGTTCTCAACAGTTTGGATCTTGGCGCAGAAGAGCAATTCAAAGCAGAAGTTAGCACTATTGGAAGAACTTACCATATCAATGTAGTTATGCTATATGGCTTCTGCTTCCACCGTGAAAAGAGAGCTCTTATATACGAGTTTGTGCAAAATGGGTCTCTCAACAACTTATTATTTGGCACTCTGAACACAGAAATCCAGTTTGGGAAGCTTCATGAGATTGCAATTGGAACAGCAAAAGGAATTGCCTACTTACATGAAGAGTGTCAACAAAGAATCATTCATTACGATATTAAACCAGAGAATATACTTCTGGGCCAGAACTTGGAACCAAAAGTTGCAGATTTTGGTCTTGCAAAACATTGTAGCAGAGAAAGCAGCCGCGTGAATATGTCTCAGTTCAGAGGAACAAGAGGGTATGCTGCACCAGAATTATGGAAGTGTTATCCTGTGAATCATAAGTGTGATGTTTATAGTTTTGGCATTGTCCTCTTTGAGATTGTAGGGAGAAGAAGGCATTTTGATTGTGGCTACAGTGAATCACAACAATGGCTTCCAAAATGGACATGGGAGATGTTTGAGAATAATGAACTACCAATGATGATTTCGCTGTTTGGGATTGAAAAAGAGAAAGACAGGGAAAAAGCCAAGAGAATGTTAATGGTGGGCCTTTGGTGTGTTCAATATTTGCCCACTGATAGGCCTCTTATGAGTAATGTGGTGAAGATGTTGGAAGGTGATATAGAAATCGCTGCCCCGCCATTTCCCTTTCAGAACTTGGGGGCTGCTAAACCAAGTTTTACACCAAAGGGAACCGATGCAGATTCAGATGCTTCTTATTCAGTAGTGGCAGAACCTTCTGATGAGCAATGCAGTTCTAAACCGGTAATGCCTGGTCTTCGCTCTTCACAGGCTCTTCACAGGCGGGAACTCTACTAG 1341 0.4221 MPYFPPSGSCVAWSTAGSIVTAVVVIAIIAIAYAVTKCMKKAPTTQISTTDHDNNMHSSNNKEIVLVKPPDSDSQVLEFATVERFLNNINREKPIRFSPEQIEEITDNYTTVLGSGAFGEVYKGELSNGQQVAVKVLNSLDLGAEEQFKAEVSTIGRTYHINVVMLYGFCFHREKRALIYEFVQNGSLNNLLFGTLNTEIQFGKLHEIAIGTAKGIAYLHEECQQRIIHYDIKPENILLGQNLEPKVADFGLAKHCSRESSRVNMSQFRGTRGYAAPELWKCYPVNHKCDVYSFGIVLFEIVGRRRHFDCGYSESQQWLPKWTWEMFENNELPMMISLFGIEKEKDREKAKRMLMVGLWCVQYLPTDRPLMSNVVKMLEGDIEIAAPPFPFQNLGAAKPSFTPKGTDADSDASYSVVAEPSDEQCSSKPVMPGLRSSQALHRRELY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00075 446 Gene3D Phosphorylase Kinase; domain 1 80 182 - -
Pral5280g00075 446 Pfam Protein kinase domain 111 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5280g00075 446 SMART serkin_6 107 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5280g00075 446 MobiDBLite consensus disorder prediction 400 446 - -
Pral5280g00075 446 PANTHER OS07G0415500 PROTEIN 68 391 - -
Pral5280g00075 446 SUPERFAMILY Protein kinase-like (PK-like) 90 379 IPR011009 -
Pral5280g00075 446 ProSitePatterns Protein kinases ATP-binding region signature. 113 135 IPR017441 GO:0005524
Pral5280g00075 446 ProSiteProfiles Protein kinase domain profile. 107 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5280g00075 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Pral5280g00075 446 Gene3D Transferase(Phosphotransferase) domain 1 183 385 - -
Pral5280g00075 446 FunFam Putative receptor-like protein kinase 183 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00075 Pral-Chr5280 695473 697499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00075 96 411 Receptor kinase-like Gene Family AT5G38280 41.667 5.19e-82 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Pral5280g00075 Pkinase 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00075 - - pcin:129320890 623.624