Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00070 ATGGCCATTATAGCAGTAGTATACGCCATTGTTCAGTGCTTGAAGAAAGCAGGATCAGTGATTCCAGCTTACACCCAGATTCCAAATACAGATAATGACCATAAAGCTTCAAATTCACCTCCTTCAAACAACAAAGAAATTGCATTAGCAATGCCACCAGATTCACAAGTGGAGTTTGCAACTATGGAAAGATTCCTCGACAACATCAACCAAGAGAAACCCATCAGATTCTCACCTGAGGAACTTGAAGAAATCACAAAGAACTACACCACTGTTTTGGGGTCAGGTGCTTTTGGGGTGGTTTATGAAGGTGAATTGTCAAATGGACAGCAAGTTGCGGTGAAAGTTCTCAACAGTTTGGATCTTGGTACAGAAGAGCAATTCAGGGCAGAAGTTAGCACCATAGGAAGAACTTACCATATCAATTTAGTTACGCTCTATGGCTTTTGCTTCCACCGTGAAAAGAGAGCTCTTGTATATGAGTATGTGCAAAATGGGTCTCTCAACAATTTATTATTTGGCAGTCTGAACAGAGAAGTTGAGTTTGGGAAGCTTCATGAGATTGCCATTGGAACCGCAAAAGGAATTGCTTACTTACATGAAGAGTGTCAACATAGGATCATTCATTATGATATTAAACCAGAGAACATACTTCTTGGCTTGAACTTGGAACCAAAAGTAGCCGATTTTGGTCTTGCAAAACTTTGCAGCAGAGAAAGCAGCCATGTCAATATGACACACTTCAGAGGAACAAGAGGATATGCTGCACCAGAATTGTGGAAGTGTTCTCCTGTGAATTACAAGTGTGATGTTTATAGTTTTGGTATTATTCTCTTTGAGATTGTGGGGAGGAGAAGGCATTTTGATAGTGGCTGCAGTGAATCACAGCAATGGCTTCCGAAATGGACATGGGATATGTTTGAGAACAATGAATTACCAGTGATGCTTTCACTGTGTGGAATTGAAGAGAGAGACCGGGAAAAAGCAAAGAGAATGTTAATGGTGGCCCTTTGGTGTGTTCAATATTTGCCTACTGATAGACCTCTTATGAGTAACGTGGTAAAGATGTTAGAGGGTGACATAGAAGTCCGTCCACCACCATTTCCCTTTCAGAATTTGGTGTCTTGTTTGCCACCACTGACTTCGCAGGGAACCAATGAAGGCTTAGATGCTTCTACTTCATGGGTGACAGAATCTTCTGAACAATCTAATTCTAAACCAGCCAACAAGATATTCCATATAGAAAAATCTGCATAG 1257 0.4081 MAIIAVVYAIVQCLKKAGSVIPAYTQIPNTDNDHKASNSPPSNNKEIALAMPPDSQVEFATMERFLDNINQEKPIRFSPEELEEITKNYTTVLGSGAFGVVYEGELSNGQQVAVKVLNSLDLGTEEQFRAEVSTIGRTYHINLVTLYGFCFHREKRALVYEYVQNGSLNNLLFGSLNREVEFGKLHEIAIGTAKGIAYLHEECQHRIIHYDIKPENILLGLNLEPKVADFGLAKLCSRESSHVNMTHFRGTRGYAAPELWKCSPVNYKCDVYSFGIILFEIVGRRRHFDSGCSESQQWLPKWTWDMFENNELPVMLSLCGIEERDREKAKRMLMVALWCVQYLPTDRPLMSNVVKMLEGDIEVRPPPFPFQNLVSCLPPLTSQGTNEGLDASTSWVTESSEQSNSKPANKIFHIEKSA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00070 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Pral5280g00070 418 Gene3D Phosphorylase Kinase; domain 1 60 162 - -
Pral5280g00070 418 FunFam Putative receptor-like protein kinase 163 365 - -
Pral5280g00070 418 Pfam Protein kinase domain 91 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5280g00070 418 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5280g00070 418 MobiDBLite consensus disorder prediction 386 410 - -
Pral5280g00070 418 MobiDBLite consensus disorder prediction 386 411 - -
Pral5280g00070 418 FunFam S-receptor-like serine/threonine-protein kinase 57 162 - -
Pral5280g00070 418 SUPERFAMILY Protein kinase-like (PK-like) 69 358 IPR011009 -
Pral5280g00070 418 MobiDBLite consensus disorder prediction 28 45 - -
Pral5280g00070 418 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Pral5280g00070 418 Gene3D Transferase(Phosphotransferase) domain 1 163 364 - -
Pral5280g00070 418 MobiDBLite consensus disorder prediction 28 48 - -
Pral5280g00070 418 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 69 368 - -
Pral5280g00070 418 SMART serkin_6 87 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00070 Pral-Chr5280 639173 643231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00070 76 370 Receptor kinase-like Gene Family AT5G38280 40.728 7.90e-81 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Pral5280g00070 Pkinase 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00070 - - pcin:129320890 738.413