Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00066 ATGAAGTATATCCGAACCAGCAGCCTCAAGAGGCTCTTCTCCTTGAAGCGACGCGGTTTCAATGAGGAAGTTCTCACCAGCGATGAAAAAGTTGACAACTTGCAGCCTCTTGCAGCCCCAGAACAGCCTTCTCAAGGACCCACCTGGAAATGCTTCTCCTACGAAGAACTCCTCGATGCCACCAATGGCTTCAGCTCAGAGAATTTGGTCGGAAAAGGAGGCTACGCGCAGGTTTACAAGGGGATATTGAAAGATGGGTACGAGATTGCGGTGAAGAGGCTGACAAGAACCTCGAGCGATGAGAGGAAAGAGAAGGAGTTCTTGACAGAGATTGGCACAATCGGCCATGTTAACCATCCAAATGTATTGCCTCTTCTGGGTTGCTGTATGGACAAGGGGCTTTACCTCGTCTTCCAGCTTTCATCCAAAGGTTCTGTTGCCTCTCTTCTTCATGATCAAAACCTGCCTCCCATGGACTGGAAAACCAGGCATAAGATAGTTCTTGGGACTGCACGTGGCCTCCATTACTTGCACAAAGGCTGCAAAAGGAGGATAATCCATCGGGACATCAAGGCCTCAAACATTCTATTAACTTCAGATTTTGAACCGCAGATATCTGATTTCGGCCTAGCAAAATGGCTTCCGAATCAATGGACTCATCATTCAATAGCCCCAATAGAAGGGACATTTGGACATTTGGCACCAGAGTATTATTTACATGGAATAGTGGATGAGAAAACAGACGTGTTTGCTTTTGGGGTTTTCTTGCTTGAAGTCATCTCAGGGAGGAAACCGGTGGACGGCTCTCACCAAAGCTTACACAACTGGGCTAAACCATTACTGAACAAAGAGGAATTAGAAAAGCTGGTAGACCCAAAGCTAGAAGGAGCCTACGATTTAGCTCAGTTACAGAGACTTGCATTTGCAGCTTCTCTCTGTATTCGAGCTTCTGCAACTTGGCGACCTACCATGAGCCAGGTACTGGAGGTAATGGAGGAGGGAGAAATGGACAAGGAGAAGTGGAAGATGCCAGAGGAGGAAGAAGAGCAAGAAGAAGAGTTCTGGGGATTTGAGGATCTGGAATATGAATATGAAAGCTCATTCTCTCTGTCGCTACCAGACTCCACTGGAAGCTCTTAA 1140 0.4693 MKYIRTSSLKRLFSLKRRGFNEEVLTSDEKVDNLQPLAAPEQPSQGPTWKCFSYEELLDATNGFSSENLVGKGGYAQVYKGILKDGYEIAVKRLTRTSSDERKEKEFLTEIGTIGHVNHPNVLPLLGCCMDKGLYLVFQLSSKGSVASLLHDQNLPPMDWKTRHKIVLGTARGLHYLHKGCKRRIIHRDIKASNILLTSDFEPQISDFGLAKWLPNQWTHHSIAPIEGTFGHLAPEYYLHGIVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHNWAKPLLNKEELEKLVDPKLEGAYDLAQLQRLAFAASLCIRASATWRPTMSQVLEVMEEGEMDKEKWKMPEEEEEQEEEFWGFEDLEYEYESSFSLSLPDSTGSS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00066 379 CDD STKc_IRAK 70 333 - -
Pral5280g00066 379 Gene3D Phosphorylase Kinase; domain 1 38 139 - -
Pral5280g00066 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Pral5280g00066 379 PANTHER OS08G0249100 PROTEIN 36 360 IPR046958 -
Pral5280g00066 379 ProSitePatterns Protein kinases ATP-binding region signature. 70 92 IPR017441 GO:0005524
Pral5280g00066 379 FunFam Putative receptor-like serine/threonine-protein kinase 32 140 - -
Pral5280g00066 379 FunFam Putative receptor-like serine/threonine-protein kinase 142 356 - -
Pral5280g00066 379 SMART serkin_6 64 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5280g00066 379 Pfam Protein tyrosine and serine/threonine kinase 67 329 IPR001245 GO:0004672|GO:0006468
Pral5280g00066 379 Gene3D Transferase(Phosphotransferase) domain 1 142 357 - -
Pral5280g00066 379 ProSiteProfiles Protein kinase domain profile. 64 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5280g00066 379 SUPERFAMILY Protein kinase-like (PK-like) 42 331 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00066 Pral-Chr5280 620400 624247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00066 46 327 Trihelix Transcription Factor Family AT1G68690 46.918 8.22e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pral5280g00066 PK_Tyr_Ser-Thr 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00066 - - gmx:100305398 587.415