Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00065 ATGGACTCTTCCTCCTCCTCTAACTGGCTCGCTTTCTCTCTCTCCAACCCCTTATCTTCCTCCTCACACTTCCCTCTTTTCCCTTCCTTCACCTCTTCTTCCCCTACCCCCACTCTCTCTCTCACAGGTAACCACACCGTCGACGCCCCTGCCGAAGCCAAGGATGGTGCGGTCGCAGCAGCACCGACCAGCCTCTCCATGTTCACTGGGGGCCCTAAGTTCGAGGACTTCCTTGGCGGAACTGCTGCCGCCTCAGCCGCCGCCACAACTGCTCCTGCGCCTACGCAGTTCCCTGCCGACAACACGCTGGGCACGGTGGTGGAGAACGAGATATATGATTCCGAGCTGAAGACGATAGCCGCCAGCTTCCTTCGTGGCTTCGCTCCCGCAGGAGGGCAAGCCGAGCCGCAACAGAAACAGACGCAGCTGATTCCGGCTGAGCCGTCCCCGAAGAAGAGCGTCGACACCTTTGGCCAACGCACCTCCATCTACCGCGGCGTCACACGGCATAGATGGACGGGAAGATACGAGGCTCATCTATGGGACAACAGTTGCAGAAGGGAAGGGCAAAGTCGGAAAGGAAGACAAGTGTATTTGGGTGGCTACGATAAGGAAGAGAAGGCAGCCAGAGCTTATGATCTCGCTGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGATTTCAAACTACCAGAAGGAACTGGAAGAGATGAAGAACATGACAAGGCAGGAGTTTGTTGCTTCTCTTCGAAGGAGGAGTAGTGGATTCTCGAGAGGCGCCTCAATATATAGAGGAGTGACGAGACATCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGAGTCGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACCCAAGAGGAAGCAGCGGAGGCGTACGATATAGCGGCCATAAAGTTCAGAGGAATAAATGCGGTGACCAACTTCGACATGAGCCGTTACGACGTGAAGAGCATTGCGAATAGTAGCCTTCCCATCGGTGGACTCTCCGGCAAGACCAAGAACTCGACGGATTCTTCTCCGTCCGACCACACCAAGAGCCCCGACGGAGCTCGGTCCGTCGACGACCGAGACCTCTCCTCCGCCAACTCCTCCGTCACTTTCGCATCCCAACCACCTCCACCACCGCCATCAAGCTCTAACAATTCTCTCACATTCGCCATACCCATCAAACAGGACACTTCAGATCATCATTACTGGTCCTCCGTTCTCGCTGGTTACAACAAGAACCCTTCCTTGATCCAACCATCTTCTTCCACCAATGGCTCCGTAACATCTGTCCTACCCTTCAACGTGGACCTCTCTACCACTACTCCCTCCAGTACGAGCATGTTTGTTCAGCAGCAGCAACAACAAAGTGGGAATAATAATAATAATGGCGGTGATTCTTCGTCCGGTTCGAGTTCATTGATGATCCCATTGGCCACGCCCATTGCTTTAAATAGTAACCCTAGTTATGAAAGCTCCTCTGGCTATGGAAACTGGAGCATCATTGGACCTACCCTGCACACCTTCCAAACCCATGCAAAAACCAGTCTCTTTCAAACCCCAATTTTTGGCATGGAATAA 1608 0.5361 MDSSSSSNWLAFSLSNPLSSSSHFPLFPSFTSSSPTPTLSLTGNHTVDAPAEAKDGAVAAAPTSLSMFTGGPKFEDFLGGTAAASAAATTAPAPTQFPADNTLGTVVENEIYDSELKTIAASFLRGFAPAGGQAEPQQKQTQLIPAEPSPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYQKELEEMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGINAVTNFDMSRYDVKSIANSSLPIGGLSGKTKNSTDSSPSDHTKSPDGARSVDDRDLSSANSSVTFASQPPPPPPSSSNNSLTFAIPIKQDTSDHHYWSSVLAGYNKNPSLIQPSSSTNGSVTSVLPFNVDLSTTTPSSTSMFVQQQQQQSGNNNNNGGDSSSGSSSLMIPLATPIALNSNPSYESSSGYGNWSIIGPTLHTFQTHAKTSLFQTPIFGME 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00065 535 FunFam AP2-like ethylene-responsive transcription factor 264 325 - -
Pral5280g00065 535 CDD AP2 264 325 IPR001471 GO:0003700|GO:0006355
Pral5280g00065 535 CDD AP2 162 231 IPR001471 GO:0003700|GO:0006355
Pral5280g00065 535 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 73 428 - -
Pral5280g00065 535 Gene3D AP2/ERF domain 163 231 IPR036955 GO:0003700|GO:0006355
Pral5280g00065 535 Gene3D AP2/ERF domain 265 325 IPR036955 GO:0003700|GO:0006355
Pral5280g00065 535 MobiDBLite consensus disorder prediction 338 360 - -
Pral5280g00065 535 MobiDBLite consensus disorder prediction 338 397 - -
Pral5280g00065 535 SUPERFAMILY DNA-binding domain 264 325 IPR016177 GO:0003677
Pral5280g00065 535 ProSiteProfiles AP2/ERF domain profile. 163 229 IPR001471 GO:0003700|GO:0006355
Pral5280g00065 535 MobiDBLite consensus disorder prediction 130 155 - -
Pral5280g00065 535 SUPERFAMILY DNA-binding domain 162 231 IPR016177 GO:0003677
Pral5280g00065 535 Pfam AP2 domain 163 221 IPR001471 GO:0003700|GO:0006355
Pral5280g00065 535 Pfam AP2 domain 265 315 IPR001471 GO:0003700|GO:0006355
Pral5280g00065 535 MobiDBLite consensus disorder prediction 451 481 - -
Pral5280g00065 535 ProSiteProfiles AP2/ERF domain profile. 265 323 IPR001471 GO:0003700|GO:0006355
Pral5280g00065 535 SMART rav1_2 163 235 IPR001471 GO:0003700|GO:0006355
Pral5280g00065 535 SMART rav1_2 265 329 IPR001471 GO:0003700|GO:0006355
Pral5280g00065 535 FunFam AP2-like ethylene-responsive transcription factor ANT 162 231 - -
Pral5280g00065 535 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Pral5280g00065 535 PRINTS Ethylene responsive element binding protein signature 305 325 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00065 Pral-Chr5280 586866 590603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00065 110 535 AP2-EREBP Transcription Factor Family AT5G57390 56.463 1.74e-151 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral5280g00065 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00065 K09285 - gmx:100797828 603.594