Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00061 ATGAACAGCTTCGATCCACACAGAGAATCTTCCTCCTTGAGATATAATCAGCAAGATATAACAACGTCGACAAATATTAATCATAACATTAATCTTATGGGTGGTTCTGCAACTCCATCTCCTTCTTCTTCTTCGGCTAACCCTATCAACAATGCTTCCCACTTCACTCACGATAAGTTCCGTGGCTTCCCTGAGCTTGACGACCACGATCTGGCGGCCACTGTCGTCCCCGCCGTGACGGTGGTCTTGGAGGGCCGTTCCATCTGCCACCGCATCAACCTCCACCACCACGACAGCTACCACAGCCTCGCCAAGGCTCTCCGCCAGATGTTTGTCGTTGACCATGGACTGACGACGGCTGATGACGGCGGCGATCTTGATCTTTCTAATGCCATTCCTGGTCATCTTATTGCTTATGAAGATATGGAGAATGATCTTCTTCTTGCCGGCGACCTCAACTGGAAGGATTTTGTGCGGGTGGCAAAGAGGATTCGGATAATTCCAGCAAAGGAAAACTCAAGGAAGGGCAAAAGAACAGGAGCATGA 546 0.4945 MNSFDPHRESSSLRYNQQDITTSTNINHNINLMGGSATPSPSSSSANPINNASHFTHDKFRGFPELDDHDLAATVVPAVTVVLEGRSICHRINLHHHDSYHSLAKALRQMFVVDHGLTTADDGGDLDLSNAIPGHLIAYEDMENDLLLAGDLNWKDFVRVAKRIRIIPAKENSRKGKRTGA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00061 181 Pfam AUX/IAA family 73 172 IPR033389 -
Pral5280g00061 181 Gene3D - 73 180 - -
Pral5280g00061 181 MobiDBLite consensus disorder prediction 27 51 - -
Pral5280g00061 181 ProSiteProfiles PB1 domain profile. 76 171 IPR000270 GO:0005515
Pral5280g00061 181 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 76 171 IPR003311 GO:0005634|GO:0006355
Pral5280g00061 181 SUPERFAMILY CAD & PB1 domains 80 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00061 Pral-Chr5280 545516 546895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00061 82 178 B3 DNA Binding Superfamily AT1G30330 29.897 1.25e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral5280g00061 AUX_IAA 3.5e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00061 - - tcc:18589307 180.644