Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00050 ATGGATAGCTCTACTGTAATTCGACCTTCTACACCCGGTTCTGGTTCTGCACCGAATCCGGCGCCTGCTTGCAATGATGATAGCCAGCGGGTTAAATTCTTATGTAGCTTTCTCGGAAATATAATGCCCCGTCCCCAAGATGGGAAGCTTCGCTATGTTGGTGGAGAGACGCGAATTGTGAGTGTTCCACGAGATATTGGTTATGAGGAGTTGATGAGTAAGATGAGGGAGCTGTATGATGGGACTGCAGTCTTAAAGTACCAGCAGCCTGATGAAGATCTTGATGCCCTCGTCTCTGTTGTGAATGACGATGATGTGGTTAATATGATGGAAGAGTATGACAAATTGGGTTCAAGTGATGGATTCACTAGGCTCAGAATATTTTTGTTCTCACAATCTGAACAAGATGTTTCACATTTCATTGATGGGGATGAGAGGGATACTGAGAGAAGGTATGTTGATGCATTGAATAATTTAAACGATGCTTCGGATTTCAGGAAGCAGCAACACGGTGAGTTTCCTGTGCTTGGTTCGGTTGAGGATTTACATGTAGCTGATCAGTTCTTTAATCCAATCAATGTGGATGGTGGCCTTCATAGCCAGAGAAGTGGTGAGGTGCCCATGACACATTTTAACTTGCATCATCCCACATTACCTCACATTGGATCAGGGCAACACCAGCAACCTATATCCCAGAGGTATAGTGACATAGATGCACCATGGAGTCCTGCATATTACTCTCCTAGGCATCATGGTCACCATGACTCTAGATCAGTGGTAGAATTTCCATCTTCTCCTTCTTCTGCAAGGTATCAGATGCCATTTGCAGAGATACCAGATAAATGCCTTGATAGAATGCCAGAAGAATATGCTCGGCACCAGGTAAATCACCATCCTGTGTATGACAATCAACCACAATATGCTGATAATGTTGTGTGGTATCCAACTGGACCTGCATCTAGTGAGAAGTCAGGTTTTCCTGGCAATATTATTCATGGCCCTCATGTTGTTGATGGGAATAGTATTTGTGAGCACTGTCGGATGAATTTTCAGAGGAGTCAATCTCATTTTGAGCATCCAAATATTAATAATGGACTTCCACTGGGGGCTAATCCATGTGCAGAATGCCACTCAAACAGGGATACTTTTATAATGAATGCAGATTCAAAGTTGCATCCTGTTATGTATCCTAATGAGCCAAATAATGATCACAGGCCTGCTTATAATGATACTCAAAATCATGAGAGATTTTGGGCTTTGCCGCATCAAACAAATAATCGGGCTGAGGAAGCAAAGAGCCACGTTTCTGGATCAGGAAGATTGAATGATCATTATGTTCTTGATGGTTCTGGCATAAATTTCTCTCTTGGGCAAGGCAGTGTGGCTGATGGACATCATTTGGCTTCAAATTACGTTCACCAAAGAGCTGGACCTGAATTGGGGCCTGAACTGTTTCACGATCAAGCTGTGGCTACTACAGCCCATCCACAAATTCCTCCTTTGGAAGAGCGCAGTGTGCGGTATGGGAACCCACCTCCTTATGGAGCTGATAGTCATTACCCTGTGACCCATGGACATGTTCCTGGGCTTGCTTTCTGGAGAAATACTCCGGCTCCACTTCGCATTGGACCATCTAATGAGGCATCTAGTCCGCCTCAGCAGTTAAATGGTGTGGTAAATGCAGGAATAAGGGGAGAGGGGAGTCCAAGAATTTACGTTGGAGCTGATAATCAAAGTCCTTGGGTTGATTCCTCACACAAAATGCCGGGTCATGATGGATTGCCCATTACAGAATTCCCTTATGCTCATGCTGTGAAGTTCAACCCAAGGACTCTTGGTCAAGAAAATCAACACCCAGTTGCTGTGGACACCATTCATCCCCCCCAGGACATTAATGTCGGCATTCGATTGGAACCAGTGCAGCTACCAAAATCACCTTTTAATATGGCTCACAACAAAGAGGTTTCAAACAATGGTACTCGTATATCTGAAGCAATGGGTTCGCTTAGTTTGCATGGTGAAGATAAAGGGGCAGAAAATGCAGACAAGGTTGAGAACTCTCATGCTCAGAGTATATCTTTTTCAGAGCAAAACAAAATACCTGAGAGTAATAGTGAAGCTGCTGCTTCTGTTGAGTCTAAAAATGCAAAATCAAAACCTGTTGAAGAATGTGGTGGTGATGTGAAACTAGCAGATGGGGATCTAACTGCTCCTGAAGATTCCAAGCACCTAGCTAATCAATTCAGTTTCTTACCTGAGTTGATTGCTTCTGTAAAAAAGGCTGCATTGGAAGGAGCTGAAGAGGTGAAAGCTAGAGCTAAGGCGCACACCACTTCTCAGAGTCACAATTCAGCAATCAAAGAGGAAACAGCAAATGAAGGAGAGACAGGGAATGCTCATGGTGATTTAGAGTTGGACTCTGATAATGACAATGTGGATACTTCTAAAATTGAACCTACAAAAGCTGAGGCGGAAGCTATTGCTAGAGGACTGCAGACAATTAAAAATGATGATTTGGAAGAGATCCGTGAACTAGGTTCAGGAACTTATGGGGCTGTCTATCACGGGAAATGGAAAGGTTCTGATGTGGCAATTAAGAGGATAAAAGCTAGCTGTTTTGCTGGAAGGCCCTCAGAAAGAGAAAGATTGATTGCAGATTTCTGGAAAGAGGCATTGATACTCAGTTCACTTCATCACCCAAACGTTGTGTCCTTCTATGGTATTGTCCGTGATGGTCCTGATGGTTCTTTAGCAACTGTGACAGAGTTCATGATTAATGGATCCCTGAAACAGTTCTTGCATAAGAAAGATAGAACTATAGATCGTCGTAAGAGGCTCATTATAGCTATGGATGCGGCATTTGGGATGGAGTATTTGCATGGAAAGAACATTGTGCATTTTGATTTGAAATGTGAGAATCTACTGGTCAACATGAGAGATCCGCAGCGGCCTGTCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTAAAACAGCACACACTAGTATCTGGAGGGGTGCGGGGTACTTTGCCATGGATGGCACCTGAACTCCTAAGTGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTTTATTCATTCGGGATTGTCATGTGGGAATTGCTCACTGGGGATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGGGGTATTGTGAACAACACATTACGTCCCCAAATCCCGACGTGGTGTGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGCTGGGCTTCTGATCCAGCAGAGAGGCCATCCTTCTCAGAAATCTCAAAGAAGCTAAGGAGTATGGCTGCGCAAATGAATGTGAAGTAG 3339 0.437 MDSSTVIRPSTPGSGSAPNPAPACNDDSQRVKFLCSFLGNIMPRPQDGKLRYVGGETRIVSVPRDIGYEELMSKMRELYDGTAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSSDGFTRLRIFLFSQSEQDVSHFIDGDERDTERRYVDALNNLNDASDFRKQQHGEFPVLGSVEDLHVADQFFNPINVDGGLHSQRSGEVPMTHFNLHHPTLPHIGSGQHQQPISQRYSDIDAPWSPAYYSPRHHGHHDSRSVVEFPSSPSSARYQMPFAEIPDKCLDRMPEEYARHQVNHHPVYDNQPQYADNVVWYPTGPASSEKSGFPGNIIHGPHVVDGNSICEHCRMNFQRSQSHFEHPNINNGLPLGANPCAECHSNRDTFIMNADSKLHPVMYPNEPNNDHRPAYNDTQNHERFWALPHQTNNRAEEAKSHVSGSGRLNDHYVLDGSGINFSLGQGSVADGHHLASNYVHQRAGPELGPELFHDQAVATTAHPQIPPLEERSVRYGNPPPYGADSHYPVTHGHVPGLAFWRNTPAPLRIGPSNEASSPPQQLNGVVNAGIRGEGSPRIYVGADNQSPWVDSSHKMPGHDGLPITEFPYAHAVKFNPRTLGQENQHPVAVDTIHPPQDINVGIRLEPVQLPKSPFNMAHNKEVSNNGTRISEAMGSLSLHGEDKGAENADKVENSHAQSISFSEQNKIPESNSEAAASVESKNAKSKPVEECGGDVKLADGDLTAPEDSKHLANQFSFLPELIASVKKAALEGAEEVKARAKAHTTSQSHNSAIKEETANEGETGNAHGDLELDSDNDNVDTSKIEPTKAEAEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPAERPSFSEISKKLRSMAAQMNVK 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00050 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 964 976 IPR008271 GO:0004672|GO:0006468
Pral5280g00050 1112 SUPERFAMILY Protein kinase-like (PK-like) 831 1100 IPR011009 -
Pral5280g00050 1112 Gene3D Transferase(Phosphotransferase) domain 1 925 1112 - -
Pral5280g00050 1112 Gene3D - 49 133 - -
Pral5280g00050 1112 Gene3D Phosphorylase Kinase; domain 1 824 924 - -
Pral5280g00050 1112 MobiDBLite consensus disorder prediction 772 815 - -
Pral5280g00050 1112 MobiDBLite consensus disorder prediction 776 791 - -
Pral5280g00050 1112 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 927 1112 - -
Pral5280g00050 1112 MobiDBLite consensus disorder prediction 793 815 - -
Pral5280g00050 1112 CDD PB1_UP2 34 130 - -
Pral5280g00050 1112 SMART serkin_6 839 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5280g00050 1112 ProSiteProfiles Protein kinase domain profile. 839 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5280g00050 1112 MobiDBLite consensus disorder prediction 1 23 - -
Pral5280g00050 1112 MobiDBLite consensus disorder prediction 684 712 - -
Pral5280g00050 1112 PRINTS Tyrosine kinase catalytic domain signature 1029 1051 IPR001245 GO:0004672|GO:0006468
Pral5280g00050 1112 PRINTS Tyrosine kinase catalytic domain signature 958 976 IPR001245 GO:0004672|GO:0006468
Pral5280g00050 1112 PRINTS Tyrosine kinase catalytic domain signature 921 934 IPR001245 GO:0004672|GO:0006468
Pral5280g00050 1112 PRINTS Tyrosine kinase catalytic domain signature 1073 1095 IPR001245 GO:0004672|GO:0006468
Pral5280g00050 1112 Coils Coil 1099 1112 - -
Pral5280g00050 1112 PANTHER SERINE-THREONINE PROTEIN KINASE 75 1105 - -
Pral5280g00050 1112 Pfam Protein tyrosine and serine/threonine kinase 840 1102 IPR001245 GO:0004672|GO:0006468
Pral5280g00050 1112 MobiDBLite consensus disorder prediction 672 725 - -
Pral5280g00050 1112 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 50 132 - -
Pral5280g00050 1112 SMART PB1_new 45 130 IPR000270 GO:0005515
Pral5280g00050 1112 SUPERFAMILY CAD & PB1 domains 47 138 - -
Pral5280g00050 1112 Pfam PB1 domain 46 131 IPR000270 GO:0005515
Pral5280g00050 1112 CDD STKc_MAP3K-like 845 1102 - -
Pral5280g00050 1112 ProSitePatterns Protein kinases ATP-binding region signature. 845 866 IPR017441 GO:0005524
Pral5280g00050 1112 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 832 926 - -
Pral5280g00050 1112 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00050 Pral-Chr5280 489823 496931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00050 25 1112 MAP Kinase Kinase Kinase AT5G57610 55.665 0.0 1095
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Pral5280g00050 PK_Tyr_Ser-Thr 4.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00050 - - gmx:100779077 1604.34