Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00039 ATGAGTTATCACCCCAATACTTCTCTTCACTTAAATCTCCCAGACGACAATAATGCTCCATTACTGAACCTAAATCTTCTTCTTGAGCCTTCTTCTTCTTCTCCTTCTTCCAACTCCAAGGAGCCCAGGATATTCTCGTGCAATTATTGTCAGAGAAAATTTTACAGCTCTCAAGCTCTAGGGGGTCACCAAAATGCTCACAAGCTTGAACGCACGCTAGCCAAGAAAAGCAGAGAGTTAATAGCTAGTTCTTCTTCTTCTTCCATTGAACCCTACAATAATGGCGGTTCAGGAGGATCAGACCAGCACCGCTCCAGCTTCAGCGCACCGAACCATCTCAGCCATCGGGCCGGGTCATCGGGGCTTGGCCTGCTCGTGAACCAAGATCAAGGTGGGAGAAGGACGACGGCGACGGATTTTAGCTATGGTTCCAAGGAAATTGTTCAGGAGGATATTGGCCAGCTTGATCTCTCTTTAAGGCTCTAG 486 0.4753 MSYHPNTSLHLNLPDDNNAPLLNLNLLLEPSSSSPSSNSKEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELIASSSSSSIEPYNNGGSGGSDQHRSSFSAPNHLSHRAGSSGLGLLVNQDQGGRRTTATDFSYGSKEIVQEDIGQLDLSLRL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00039 161 Gene3D Classic Zinc Finger 26 94 - -
Pral5280g00039 161 FunFam Zinc finger protein 2 27 91 - -
Pral5280g00039 161 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 104 IPR044246 GO:0009788
Pral5280g00039 161 MobiDBLite consensus disorder prediction 80 138 - -
Pral5280g00039 161 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
Pral5280g00039 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Pral5280g00039 161 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00039 Pral-Chr5280 423481 423966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00039 1 96 C2H2 Transcription Factor Family AT5G57520 64.762 2.44e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5280g00039 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00039 - - gmx:100781826 127.487