Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00030 ATGGCCAGCCTAAACTTCTATTGCCATGCTTCCCTTATAATAATTTCTTTTGCTGTCTTGTTAACGGCTGAGATTGGAGCAAGCGATGATGCAGGGTTACTCCTTGGAGGGAAGAAGTTGATAATTGGTGTCCCTAAGAAACCAAGCTTCATCCAGTTTGTGGATGCACAACTGAATCCTTTCAACAAGACTCAGCTCTTGAATGTTACTGGCTATTCAATTGACGTTTTCTTGGCTACAATAGCTTACCTTCGGCGTTCAAATTACAATATTTCCTACGAGTTTAGTGCTTTTGTCGACAAAAGTGGAAAAACTAGTGGGGGTTATGATGGACTCGTCTACGAGGTTCACCAAGGAAAGTACGATGCTGCAGTGGCGGATTTGACGATTGTGGCAAACAGGTCGAACTTCGTAGATTTTACGTTGCCATATGCACAGTCTGACCTGAGGATGCTTGTGAAAGTTCGACATGATCCACGCTTGAATATGTGGATTTTTGTACGACCATTTACCTGGGACATGTGGCTATGCATTGTCGTGGTTTGTATTTTCACGGGGGCTGTCATAATATTCACGGAACGCCATGTCCAGGAAGGTTCAACACGCCAAAATTCTCCAATCAAAAAGCAACTTAGTGGGGTTTCTATCTTGTGGCTTCCCGTAGTGCAAGCGGTTTTTCCTGAAAGAGAATCATTGGCCAAAAATTGTTCTAGGTTTGTGCTGGTGATGTGGCTGATTCTAGTATTTGTACTGATGCAAAGTTACACGGCATGCCTTTCATCAATCTTGACCGTACATCAGCTCCAACCTCGTTTTTCTAGTGAGTATGAAATTAGAACAGATCCCAACATTTACGTTGGATGCCACTATGGCTCATTCATCCGCGGCTTACTGGTTGATAGCTTGAAGGTTGATAGTTCAAGGGTGAAGGAATACGCTGGCATCGAAAGTTACAAGGAGGCCTTGGACAAAGGAAGCCGTAAAGGTGGCGTCGATGCCATTTTTGACGAAGTTCCCTACATGAAAGTCTTCCTTAAGAAATATGGTTCAAATTATGCCATGGTGGGGCCTAGGCACCGCACGGGTGGATTTAGCTTTGCATTTCGTAAGAATTCCACCTTAACCTCGTACTTCTCTCAAGCGATATTAAATGTAAGCGAGAGTAATGAAATGGACTGCATCGAGGATAAATATTTTAAAACTCATGACGATGATGATGGCAAATCTACTTCATCGTTAGATGGTGATAGTGCCAGCCTCAGCGCATACAGCTTTGCAGGTTTGTTTGTGGTGTTTGGAATTCTTTCACTGCTAGCTTTGTTAGTCTCTGAACATCGTGTTTGGAGAAGACATGTTATGCTAATGAAAATGTATAGCAATGGATTGTTGGGTCGGAGTTGTACAAGAATTAATCCGCCAGAGGAAAGTTCTACAGTAAGGAGAAATGTTGAGGATGGAGAAGGTTCTATAAACAGAGAAAATATTGGATCAGAAGATGGATACTATAACCACGCAAAGATATTGGTGGCATCTCTTCCTTAA 1542 0.4254 MASLNFYCHASLIIISFAVLLTAEIGASDDAGLLLGGKKLIIGVPKKPSFIQFVDAQLNPFNKTQLLNVTGYSIDVFLATIAYLRRSNYNISYEFSAFVDKSGKTSGGYDGLVYEVHQGKYDAAVADLTIVANRSNFVDFTLPYAQSDLRMLVKVRHDPRLNMWIFVRPFTWDMWLCIVVVCIFTGAVIIFTERHVQEGSTRQNSPIKKQLSGVSILWLPVVQAVFPERESLAKNCSRFVLVMWLILVFVLMQSYTACLSSILTVHQLQPRFSSEYEIRTDPNIYVGCHYGSFIRGLLVDSLKVDSSRVKEYAGIESYKEALDKGSRKGGVDAIFDEVPYMKVFLKKYGSNYAMVGPRHRTGGFSFAFRKNSTLTSYFSQAILNVSESNEMDCIEDKYFKTHDDDDGKSTSSLDGDSASLSAYSFAGLFVVFGILSLLALLVSEHRVWRRHVMLMKMYSNGLLGRSCTRINPPEESSTVRRNVEDGEGSINRENIGSEDGYYNHAKILVASLP 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00030 513 SUPERFAMILY Periplasmic binding protein-like II 12 400 - -
Pral5280g00030 513 Gene3D - 292 405 - -
Pral5280g00030 513 Pfam Ligand-gated ion channel 401 434 IPR001320 GO:0015276|GO:0016020
Pral5280g00030 513 CDD GluR_Plant 38 399 - -
Pral5280g00030 513 Pfam Bacterial extracellular solute-binding proteins, family 3 55 400 IPR001638 -
Pral5280g00030 513 Gene3D - 34 164 - -
Pral5280g00030 513 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 450 IPR015683 -
Pral5280g00030 513 SMART GluR_14 39 401 IPR001320 GO:0015276|GO:0016020
Pral5280g00030 513 Gene3D - 165 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00030 Pral-Chr5280 322656 325002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00030 37 442 Ion Channels AT2G29120 38.821 9.17e-73 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00030 K05387 - pcin:129319224 756.518