Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00029 ATGGCGAAACCAAAGTTTTCTTACTATGACTACGTCTGCCTCATTTCTTTTATTGTTTGGTTCATTGCTCAGCTTGGGACATGTGATGGCGTAGTCCCACTTTTGGGGGGCAAGAAGTTGATAATTGGTGTGCCTAAGAAACCTGGTTTCACTCAATTTGTAGATGTACAAGTGAATCCAAGTGATAAACAGTTGGTGAAGGTTACTGGCTTCTCCATCGAGGTTTTCAATGCTACGACAACTCACCTTCAGAACATAGGTTTCAATGTTTCTGTTGAATTTAGAGCTTTCGTAAACGACATTGGAGGCAGCGCAGGAACCTACGACACACTCCTTCAAAATATTCCTGGACAGTATGATGCTGTGGTGGGAGATGTAACGATTGTGGCAAATCGATCAAATTATGTAGACCTTACACTACCATACGCAGAGTCAGGTGTAAAAATGCTTGTAAAAGTTCGACAAGAACAGAACTGGAACAAGCACATGTGGAATTTCGTACGACCTTTCAGTTGGGATCTTTGGCTGTCGATCGTCATGTTCAGTATTTTTATAGGATGTACTTTACGGTTCATGGAACGTCATGTCCATAATGAGAATGCAGGACCCGGCAATCCACCACCACCAAGAGAACAACTAAATAAAGCTGTATCATTCTTGTGGCTCCCTTTAACACAAGCAGTTCTTCCTGAAAGAGAATCATTAGTGAAGAATTGTTCGAGGTTTGTGTTGGTGTTGTGGTTGATATTAGCGGGTATCCTCATGCAAAGCTACACAGCAAGCTTGTCATCAATACTGACAGTAGATCAATTACAACCTGATTACATCGGTCTTAATGATGTCATGAGAGATCCTCAAATTAACGTTGGATACCAACGTGACTCATTTGTCAGAGATTTGCTAGTGGATCGCTTGAAGCTTGATGAATCAAGACTAAAGTCTTTCCGCACCATCGAAGAATACAAAGATGCCTTGGACAAAGGAAGCAGAAATGGCGGTGTTGATGCTATTTTTGATGAAGCTCCCTATATTAAGGTCTTCCTCAAGGAATGTGGTCCCAGTTATGCCATGTCCGGACTTAGTTACCACACCGGCGGTTTTGGTTTCGCGTTCCCAAAAAACTCGAGCATAACCTCGTATTTTTCAAGAGCCATATTAAATGTCACTGAAAGTGACGCAATGGAGCAGATTGAACGAAAATATTTTGGAAGTAGAGATGACGATGAAGTCGTAGAACAAAATAAGGGGTCGTCGTCTGAGAATACCAGCACTAGTCTCACCACGTATAGTTTTGGAGGTTTATTCATTGTGATTGGAGGCCTAACATTTTTGGCTTTGGTAGTTTCAGAAAGTGGTATTTGGAGAAAACCGATGATGTTGGCAAAAACTTATAGCAAAACATTGGTGGTTCGATATTCTAAGAAAGCAAGTCAATTAAGGAAGGGTTCTACAATCACAAGAGACTTTAACTCATCAATGAACAAAGATAATAAATCAAATAACCAACAAACAATTGAGGTATATGACGTGGAAGACGTGCACTAG 1545 0.4084 MAKPKFSYYDYVCLISFIVWFIAQLGTCDGVVPLLGGKKLIIGVPKKPGFTQFVDVQVNPSDKQLVKVTGFSIEVFNATTTHLQNIGFNVSVEFRAFVNDIGGSAGTYDTLLQNIPGQYDAVVGDVTIVANRSNYVDLTLPYAESGVKMLVKVRQEQNWNKHMWNFVRPFSWDLWLSIVMFSIFIGCTLRFMERHVHNENAGPGNPPPPREQLNKAVSFLWLPLTQAVLPERESLVKNCSRFVLVLWLILAGILMQSYTASLSSILTVDQLQPDYIGLNDVMRDPQINVGYQRDSFVRDLLVDRLKLDESRLKSFRTIEEYKDALDKGSRNGGVDAIFDEAPYIKVFLKECGPSYAMSGLSYHTGGFGFAFPKNSSITSYFSRAILNVTESDAMEQIERKYFGSRDDDEVVEQNKGSSSENTSTSLTTYSFGGLFIVIGGLTFLALVVSESGIWRKPMMLAKTYSKTLVVRYSKKASQLRKGSTITRDFNSSMNKDNKSNNQQTIEVYDVEDVH 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00029 514 Pfam Ligand-gated ion channel 404 439 IPR001320 GO:0015276|GO:0016020
Pral5280g00029 514 CDD GluR_Plant 38 402 - -
Pral5280g00029 514 SUPERFAMILY Periplasmic binding protein-like II 15 404 - -
Pral5280g00029 514 Gene3D - 368 402 - -
Pral5280g00029 514 Gene3D - 319 367 - -
Pral5280g00029 514 SMART GluR_14 39 404 IPR001320 GO:0015276|GO:0016020
Pral5280g00029 514 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 487 IPR015683 -
Pral5280g00029 514 Gene3D - 163 297 - -
Pral5280g00029 514 Gene3D - 34 162 - -
Pral5280g00029 514 Pfam Bacterial extracellular solute-binding proteins, family 3 67 403 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00029 Pral-Chr5280 313145 315425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00029 37 448 Ion Channels AT2G29120 39.467 3.63e-80 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00029 K05387 - pcin:129319703 513.072