Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00025 ATGGAACGTAATGTCAGAAGAGATTCGACACTTGAAAATTCATCATGCAGGAAAAAATTCAGTGGGGTTTCTATCCTGTGGCTTCCTGTTGTGCAAGCAGTTTTTCCCGAAAGAGAATCACTGGCCAAAAATTGCTCTAGGTTTGTGCTGGTGATGTGGTTGATATTGGTATTTGTGCTCATGCAAAGCTACACAGCATGCTTATCATCTATCTTAACGGTACATCAATTACAACCTCGATACCTTAGTGAGAATGATGTTGCAGAAGATTCCAACATTAATGTTGGATACCACAGTGGCTCATTTGTGAGGGACTTATTGGTTGATAACTTGATGATCAATAGTTCAAGGGTGAAGAACTACTCCTCCATTAAAGACTATAAGGAAGCCTTAGACAAAGGAAGCCATAATGGTGGTGTCGATGCCATTTTTGATGAAGCTCCCTACTTTAAGGCCTTCCTCAAACAGTATGGCTCCAATTATGCCGTGGTTTCAACTAAGCACCATGCTGCTGGATTTGGTTTTGCATTTCGTAAGGGCTCCAACTTAACCTCGCACTTTTCGAAAGCCATATTAAATATTAGGGAGAGTAATGAAATGGACGGCATTGAGGAGAGATATTTTGGAAGCAGCGATGACGATGGAAACAAAGATCAATCAAATTCATCATCAAATGCGAGTCCCAGTCTTACTGCTTATAGTTTTGCAGGTTTGTTTATGGTAATTGGAACATTTTCATTGTTGGCTTTAGCAGTCTCTGAAAATCATATATGGCGAAAACCTGTTATGCTCGCAAAGACTTATAGCCAACAATTTTTGAGTCCGAATTCAACAAGAATTAATCCATTAGAGGAAACTTCTACCAGAAATGTTGACAACGAATGTTCTGCAGACACAAAAAATATTGGATCTGCAGAAAATGAAGCAGATAATAAAACATTGCCTGTGTAA 951 0.3912 MERNVRRDSTLENSSCRKKFSGVSILWLPVVQAVFPERESLAKNCSRFVLVMWLILVFVLMQSYTACLSSILTVHQLQPRYLSENDVAEDSNINVGYHSGSFVRDLLVDNLMINSSRVKNYSSIKDYKEALDKGSHNGGVDAIFDEAPYFKAFLKQYGSNYAVVSTKHHAAGFGFAFRKGSNLTSHFSKAILNIRESNEMDGIEERYFGSSDDDGNKDQSNSSSNASPSLTAYSFAGLFMVIGTFSLLALAVSENHIWRKPVMLAKTYSQQFLSPNSTRINPLEETSTRNVDNECSADTKNIGSAENEADNKTLPV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00025 316 Pfam Bacterial extracellular solute-binding proteins, family 3 94 209 IPR001638 -
Pral5280g00025 316 Gene3D - 137 214 - -
Pral5280g00025 316 MobiDBLite consensus disorder prediction 277 316 - -
Pral5280g00025 316 SMART GluR_14 2 210 IPR001320 GO:0015276|GO:0016020
Pral5280g00025 316 MobiDBLite consensus disorder prediction 205 227 - -
Pral5280g00025 316 Pfam Ligand-gated ion channel 13 243 IPR001320 GO:0015276|GO:0016020
Pral5280g00025 316 SUPERFAMILY Periplasmic binding protein-like II 63 210 - -
Pral5280g00025 316 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 276 IPR015683 -
Pral5280g00025 316 Gene3D - 2 122 - -
Pral5280g00025 316 MobiDBLite consensus disorder prediction 277 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00025 Pral-Chr5280 296004 297417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00025 24 250 Ion Channels AT5G11210 35.965 1.73e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00025 K05387 - pcin:129319703 458.759