Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00024 ATGGCGAACCCAAATTACTATTGCTACGGCTTCCTCATTATGATTTCTCCGGTTGTGTTGTTAATTGCTCCGATTGGTGCTGGAGATGATGATGGAGGGTCACTCCTGGGAGGGAAGAAGTTGATCATTGGACTTCCTTATGAACCAGGCCACACCCAGTTTGTGAATGTTGTGCAAATCGATCCTACTAATAACAATCAGGTCATCCATGTAAGGGGCTATTCTATTGACGTCTTCAATGATGCAATAGCGTACCTGCGTCTACATCACAATGTTTCTTTCGAGTTTAGAGCTTTCGCAGACCCCAGTGGAGGAAGCAGTGCTGGGTATTATGACGCCTTCGTCTCCCAACTTTCTGAAAAGATGCTTGTGAAAATCCATGATCCACGGTTGAATATGTGGAGTTTTGTACGACCGTTTAGTTGGAATCTTTGGTTGTCTATCGCTATGTTCTCTGCTTTTATAGGAGCTATCATACTATTCATGGAACGTAATGTCAGAAAAGATTCAACACTTGAAAATTCATCATGGAGGAAACGATGCATTACAGGGGGTTCTGTCCTGTGGCTTCCTGCTGTGCAAGCAGTTTTTCCAAAAAGAGAATCATTGACCAAAACTTCTTCTAGGTTTGTGCTGATGATGTGGTTGATACTGGTATTTGTGCTCATGCAAAGCTACACAGCATGCTTATCATCGATCTTAATAGTGCATGAGTTACAACCTCAGTACCTTAGTGAGAACGATGTTATAAAGGATAGCAACATTAATGTTGGATACAAAAGTGGCTCATTTGTGGGAGACTTGTTGGTCAATAAATTGACAATGGGTGATGAGTCAAGGGTGAAGAATTACTATGGCATTGAAGAATATAAGGAGGCTTTAGACAAAGGAAGCCATAATGATGGAGTCGATGCTATTTTTGATGAGTCTCCCTACTTTAAGACCTTCCTCCACCGGTATGGCTCCAAGAATTATGCCGTGGTTGGAACTAGTCTCCATTATGGTGGATTTGGTTTTGCATTTCGTAAGGGCTCCAACTTAACCGCATACTTTTCTGAAGCCATATTAAATATCACCGAGAGTAATGTAATAATGAAAAGGATTGAGGAGACATATTTTGGAGACAGCGATGATGATGATGGAAAAGAAGACCTATATAATTCACCCTCACATGACGTTAGTCCCAGTCTTACTGCTTACAGCTTTGCAGGTTTGTTCGTGGTGATTGGGATTCTTTCACTGTTGGCTTTGCTAGTCTCTGAAATGCTCGCAAAGGTTGATAGCCAACGATTACTGAGTCCGAGTTCTGCAAGATTAAGTCCATTAGAGGAAGGTTCTGAAACAAGAAATAATGTTGACGAAGAATGTTCTGCAGACACACAAAATATCGGATCAGAAAATGGAGGAGATAATAAAACATTGCCTGTGTAA 1431 0.4123 MANPNYYCYGFLIMISPVVLLIAPIGAGDDDGGSLLGGKKLIIGLPYEPGHTQFVNVVQIDPTNNNQVIHVRGYSIDVFNDAIAYLRLHHNVSFEFRAFADPSGGSSAGYYDAFVSQLSEKMLVKIHDPRLNMWSFVRPFSWNLWLSIAMFSAFIGAIILFMERNVRKDSTLENSSWRKRCITGGSVLWLPAVQAVFPKRESLTKTSSRFVLMMWLILVFVLMQSYTACLSSILIVHELQPQYLSENDVIKDSNINVGYKSGSFVGDLLVNKLTMGDESRVKNYYGIEEYKEALDKGSHNDGVDAIFDESPYFKTFLHRYGSKNYAVVGTSLHYGGFGFAFRKGSNLTAYFSEAILNITESNVIMKRIEETYFGDSDDDDGKEDLYNSPSHDVSPSLTAYSFAGLFVVIGILSLLALLVSEMLAKVDSQRLLSPSSARLSPLEEGSETRNNVDEECSADTQNIGSENGGDNKTLPV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00024 476 MobiDBLite consensus disorder prediction 455 476 - -
Pral5280g00024 476 MobiDBLite consensus disorder prediction 436 476 - -
Pral5280g00024 476 Gene3D - 130 271 - -
Pral5280g00024 476 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 122 426 IPR015683 -
Pral5280g00024 476 Pfam Bacterial extracellular solute-binding proteins, family 3 255 374 IPR001638 -
Pral5280g00024 476 SUPERFAMILY Periplasmic binding protein-like II 18 375 - -
Pral5280g00024 476 Pfam Ligand-gated ion channel 141 411 IPR001320 GO:0015276|GO:0016020
Pral5280g00024 476 SMART GluR_14 40 375 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00024 Pral-Chr5280 287714 290710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00024 38 455 Ion Channels AT5G11210 30.820 1.47e-48 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00024 K05387 - pcin:129319703 518.079