Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00023 ATGGCAAACCCAAACTACCATTTCTTTGGCGACCAGTGCGTTACCATGACATTTTTTGCAGTTTTGCTTTTAATAGCTCAGACTGGAGCTGGTGATGAAGCTGGTTCACTAATCCTGGAAGGGAAGAAGCAGTTGATAGTTGGTGTTCCTAAGAAATGCGGCTTAATAGATTTCGTGGACTTAAAACTGGATTCCAGAAATAAGAATCTGGTGGAGAAGGCTCAGGGCTATTCCATTGAGGTTTTCAATGCTACAATAGCCCTCCTTCAGAATATTTCCGTCAAGTATATGGCCTTCGCAAACGAAGATGGAAGTTGTGTTGAGGATTACAACGCACTCCTCGATCAGATCTCCAAAGGAAAGTACGGTGCTGTGGTGGGAGATGTGACAATTGTGGCAAATCGTTCCAATTATGTCGATTTTACTTTACCCTATACACAATCTGATGTGAAGATCCTTGTTAAGGTTCGACATGATCCACGGTTAGATATGTGGATTTTTGTACGACCTTTTAGTTGGGATCTGTGGTTGTCGATCGCCGTCGTCTGTGTTTTCATAGGAGGTATCATACTATTCATGGAACGGAATGTTAAGCAGGATTCAGGACATGAAAATTCGCCGTTGAAAAAGCAACTTAGTGGCGTTTCTATTCTATGGTTTCCCATAGTCCAAGCAATTCTTCCGGAAAAGGAATCATTGGCCAAGAATTGCTCTAGGTTTGTACTCGTGCTATGGTTAATATTAGCATTTGTGCTAATGCAAAGTTACACGGCATGCTTATCATCAATCTTGACAGTACATCAGCTGCAACCTCGTTACCCTAATGAGTACGACGTTCTTAATGACCCCAACATTAACATTGGGTACCAGGGTGGCTCATTCATTAAAGGCTTGTTGCTTGAGAGATTAAAAGTTCCCAAGTCAAGGGTGAAGAACTGTTCAACTATTGAACAATACAAGGAGGCCTTAGATAAAGGAAGCCGTGAAGATGGTGTAGATGCTATTTTTGACGAAGTTCCCTACATTAAGGTGTTCCTCAAAAAATATGGTTCTAACTATGCCATGATTGAAACTAGGCACCGCACTGATGGATTTGCTTTTGCATTCCCCAAAGGCTCCAACTTAACCTCGTACTTTTCTAGAGCCATATTAAATGTGAGAGAGAGTGAAGAGATGGACAAGATTGAGGAAAAATATTTTGGAAGCAATCACAAGGACAATAATGAAGGCCAAGGCTTAGCTACTTCATCATCATCAGACGATGCAAGGTCTAACCTTACCACCTATAGCTTTGCAGGTCTGTTCATGGTAATTGGAATTCTTTCACTTTTAGCTTTGGCAGTTTCTGAAAGTCATGTTTGGCAAAAACCTGTTATGCTCGCAAGAACCTATAGCCGACAATTGCTGATAAGTTGGAGTTTTGCAAGAACAAGAAGAAATGCTGATGGGGAAGGTTTTGCAACGAGAAAATAA 1473 0.4121 MANPNYHFFGDQCVTMTFFAVLLLIAQTGAGDEAGSLILEGKKQLIVGVPKKCGLIDFVDLKLDSRNKNLVEKAQGYSIEVFNATIALLQNISVKYMAFANEDGSCVEDYNALLDQISKGKYGAVVGDVTIVANRSNYVDFTLPYTQSDVKILVKVRHDPRLDMWIFVRPFSWDLWLSIAVVCVFIGGIILFMERNVKQDSGHENSPLKKQLSGVSILWFPIVQAILPEKESLAKNCSRFVLVLWLILAFVLMQSYTACLSSILTVHQLQPRYPNEYDVLNDPNINIGYQGGSFIKGLLLERLKVPKSRVKNCSTIEQYKEALDKGSREDGVDAIFDEVPYIKVFLKKYGSNYAMIETRHRTDGFAFAFPKGSNLTSYFSRAILNVRESEEMDKIEEKYFGSNHKDNNEGQGLATSSSSDDARSNLTTYSFAGLFMVIGILSLLALAVSESHVWQKPVMLARTYSRQLLISWSFARTRRNADGEGFATRK 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00023 490 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 456 IPR015683 -
Pral5280g00023 490 Gene3D - 40 163 - -
Pral5280g00023 490 MobiDBLite consensus disorder prediction 405 421 - -
Pral5280g00023 490 Gene3D - 366 400 - -
Pral5280g00023 490 Gene3D - 164 291 - -
Pral5280g00023 490 Pfam Bacterial extracellular solute-binding proteins, family 3 73 401 IPR001638 -
Pral5280g00023 490 Pfam Ligand-gated ion channel 402 440 IPR001320 GO:0015276|GO:0016020
Pral5280g00023 490 SMART GluR_14 44 402 IPR001320 GO:0015276|GO:0016020
Pral5280g00023 490 MobiDBLite consensus disorder prediction 400 421 - -
Pral5280g00023 490 SUPERFAMILY Periplasmic binding protein-like II 18 403 - -
Pral5280g00023 490 Gene3D - 315 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00023 Pral-Chr5280 268723 284406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00023 31 448 Ion Channels AT2G29120 39.492 1.00e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00023 K05387 - pcin:129319703 589.341