Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00022 ATGGCAAACCCAAACTACCATTTCTTTGGCGACCAGTGCGTTACCATGACATTTTTTGCAGTTTTGCTTTTAATAGCTCAGACTGGAGCTGGTGATGAAGCTGGTTCACTAATCCTGGAAGGGAAGAAGCAGTTGATAGTTGGTGTTCCTAAGAAATGCGGCTTAATAGATTTCGTGGACTTAAAACTGGATTCCAGAAATAAGAATCTGGTGGAGAAGGCTCAGGGCTATTCCATTGAGGTTTTCAATGCTACAATAGCCCTCCTTCAGAATATTTCCGTCAAGTATATGGCCTTCGCAAACGAAGATGGAAGTTGTGTTGAGGATTACAACGCACTCCTCGATCAGATCTCCAAAGGAAAGTACGGTGCTGTGGTGGGAGATGTGACAATTGTGGCAAATCGTTCCAATTATGTCGATTTTACTTTACCCTATACACAATCTGATGTGAAGATCCTTGTTAAGGTTCGACATGATCCACGGTTAGATATGTGGATTTTTGTACGACCTTTTAGTTGGGATCTGTGGTTGTCGATCGCCGTCGTCTGTGTTTTCATAGGAGGTATCATACTATTCATGGAACGGAATGTTAAGCAGGATTCAGGACATGAAAATTCGCCGTTGAAAAAGCAACTTAGTGGCGTTTCTATTCTATGGTTTCCCATAGTCCAAGCAATTCTTCCGGAAAAGGAATCATTGGCCAAGAATTGCTCTAGGTTTGTACTCGTGCTATGGTTAATATTAGCATTTGTGCTAATGCAAAGTTACACGGCATGCTTATCATCAATCTTGACAGTACATCAGCTGCAACCTCGTTACCCTAATGAGTACGACGTTCTTAATGACCCCAACATTAACATTGGGTACCAGGGTGGCTCATTCATTAAAGGCTTGTTGCTTGAGAGATTAAAAGTTCCCAAGTCAAGGGTGAAGAACTGTTCAACTATTGAACAATACAAGGAGGCCTTAGATAAAGGAAGCCGTGAAGATGGTGTAGATGCTATTTTTGACGAAGTTCCCTACATTAAGGTGTTCCTCAAAAAATATGGTTCTAACTATGCCATGATTGAAACTAGGCACCGCACTGATGGATTTGCTTTTGCATTCCCCCTAGGCTCCACCTTAACTTCACACTTTTCCAGAGCCATATTGAATATGCGCGAGAGTCCAAAAATGGATGAGATTGAGCATAAATATTTTGGAAGCAGTAACGACGATGAAGGCCAAAGCCGATCCAATCCGTCGTTAGATGATGATGCAAGTCCAAGCAGCCTCACTACTTATAGCTTTGCAGGTTTGTTCATGCTAATCGGAGTTTTTTCGCTGTTAGCTTTGATAGTCTCTGAAAATCGCATTTGGCGAAAACCTATCATGGGAGCAAAAATGTACATCCAACCACTCTTGAGTCGGAGGTTTACAAGAACTAATCCATTAGAGGAAGGTTCTACAAGAAGAAGAAATAATATTATTGATGGGGTGGAAGAAAATATTGGATCAGACGACAGAGCAAATAACCAGGAAAGCTCTCTATGA 1533 0.4155 MANPNYHFFGDQCVTMTFFAVLLLIAQTGAGDEAGSLILEGKKQLIVGVPKKCGLIDFVDLKLDSRNKNLVEKAQGYSIEVFNATIALLQNISVKYMAFANEDGSCVEDYNALLDQISKGKYGAVVGDVTIVANRSNYVDFTLPYTQSDVKILVKVRHDPRLDMWIFVRPFSWDLWLSIAVVCVFIGGIILFMERNVKQDSGHENSPLKKQLSGVSILWFPIVQAILPEKESLAKNCSRFVLVLWLILAFVLMQSYTACLSSILTVHQLQPRYPNEYDVLNDPNINIGYQGGSFIKGLLLERLKVPKSRVKNCSTIEQYKEALDKGSREDGVDAIFDEVPYIKVFLKKYGSNYAMIETRHRTDGFAFAFPLGSTLTSHFSRAILNMRESPKMDEIEHKYFGSSNDDEGQSRSNPSLDDDASPSSLTTYSFAGLFMLIGVFSLLALIVSENRIWRKPIMGAKMYIQPLLSRRFTRTNPLEEGSTRRRNNIIDGVEENIGSDDRANNQESSL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00022 510 MobiDBLite consensus disorder prediction 478 501 - -
Pral5280g00022 510 Gene3D - 164 291 - -
Pral5280g00022 510 Pfam Ligand-gated ion channel 402 438 IPR001320 GO:0015276|GO:0016020
Pral5280g00022 510 MobiDBLite consensus disorder prediction 478 510 - -
Pral5280g00022 510 MobiDBLite consensus disorder prediction 405 422 - -
Pral5280g00022 510 Pfam Bacterial extracellular solute-binding proteins, family 3 73 401 IPR001638 -
Pral5280g00022 510 Gene3D - 315 365 - -
Pral5280g00022 510 MobiDBLite consensus disorder prediction 398 422 - -
Pral5280g00022 510 Gene3D - 366 400 - -
Pral5280g00022 510 SMART GluR_14 44 402 IPR001320 GO:0015276|GO:0016020
Pral5280g00022 510 SUPERFAMILY Periplasmic binding protein-like II 18 402 - -
Pral5280g00022 510 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 454 IPR015683 -
Pral5280g00022 510 Gene3D - 40 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00022 Pral-Chr5280 266366 284355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00022 31 447 Ion Channels AT2G29120 38.657 3.37e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00022 K05387 - pcin:129319703 589.726