Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00021 ATGGCAAGGCCAAATTACTATCACTATGGCAACCTTATAACGATTTCTTGTGTTGTGTTGTTAATAGCTGAGATTGTAGCAGGCGACGGTGAAGCTGGCTCACTCCTAGGAGGGAAGAAGTTAATAATTGGACTTCCTAAGAAAACTGGCTTCACCCAGTTTGTGGATGTACAACTCAATTCAAGTAATAATAATCAGATCGTCAAGATTACGGGCTATTCCATTGACGTCTTCCATGCGGCCATAACTTACCTTAAGAGTTTGCATTACAATATTTCTTTCGAGTTTAGGGCTTTCGTAGACGAAGATGGAAACAGTGCAGGGGATTACAACGCACTCGTCTATCAGATTTTTGAAGGAAAGTACGATGCTGTGGTGGGAGATGTGTCGATTTTGGCACATCGATCAAACTATGTTGATTTCACAGTACCGTATGAACCGTCTGATATCAAGATGCTTGTGAAGGTTCGCCACGATCCACGGTTGAATATGTGGATTTTTGTGCGACCTTTTAGGTGGGATCTATGGTTGTCTATTGCTATCTTCAGTACTTTTATAGGAGGTATCATATTGTTAATGGAACGTACTGTCAAGGAAGATTCAGCATTTGAAGATTCACCATATCGGAAACAACTCAGCGGGGTTTCTGTTTTATGGCTTCCAGTAGAACAAGCAGTTCTGCCTGAAAAAGTATTGGTTAAGAATTGCTCTAAGTTTGTGCTGGTGATGTGGTTGATACTCGCATTTGTGTTGATGCAAAGTTACACTGCAAGCTTGTCATCAATGTTGACAGTACATCAGTTACAACCTCGTTACCTTAGTGAGTATGACGTTATAACAGACCCAAACATTAATGTTGGACACCACTGTAACTCATTCATCGGAGGTTTATTGATCGATGGCTTGAAGATTGATAGGTCGAGGGTGAAGAACTACCCTGACATTAAAGAATATAAGGAGGCTTTGGACAAAGGAAGCCTTAAAGGTGGCGTTGATGCAATTTTGGATCATATTTCCCACGTTAAGGTCTTCCTCAAGCAGTATGGTTCCGATTATGCCATGGTCGATACCAGACATCGCATTGGTGGATTTGCTTTTGCATTTCCCAAGGGCTCCAACTTAACCTCGTACTTTTCTAGAGCTATATTAAATGTGAGAGAGAGTGGAGAAGTGGACAAGATTGAGGAAAAATATTTTGGAAGCAATCATGAGAACTATGAAGGCCAAGGCTTATCTACTTCATCATCGGACAATGCAAGTTCCAACCTTACCACTTATAGCTTTGCAGGTTTGTTCATGGTAATTGGAATTCTTTCGCTTTTAGCTTTGGCAGTCTCTGAAAGTCATATTTGGCAAAAACCTGTTATCCTAGCAAGGACATATAGCCGACAATTGCTGATGAGTTGGAGCTTTACAAGAACTAGTTCATTAAAGGGAGGTTCTACATCAAGAAGAACTATTGATGGAGAAGGTTTTACAATGAGAGAAAACAATCAAAATATTGGATTGCAAGCTGATCATATAAAACCTTGCCAACTTTTTGATGTTTAG 1551 0.4023 MARPNYYHYGNLITISCVVLLIAEIVAGDGEAGSLLGGKKLIIGLPKKTGFTQFVDVQLNSSNNNQIVKITGYSIDVFHAAITYLKSLHYNISFEFRAFVDEDGNSAGDYNALVYQIFEGKYDAVVGDVSILAHRSNYVDFTVPYEPSDIKMLVKVRHDPRLNMWIFVRPFRWDLWLSIAIFSTFIGGIILLMERTVKEDSAFEDSPYRKQLSGVSVLWLPVEQAVLPEKVLVKNCSKFVLVMWLILAFVLMQSYTASLSSMLTVHQLQPRYLSEYDVITDPNINVGHHCNSFIGGLLIDGLKIDRSRVKNYPDIKEYKEALDKGSLKGGVDAILDHISHVKVFLKQYGSDYAMVDTRHRIGGFAFAFPKGSNLTSYFSRAILNVRESGEVDKIEEKYFGSNHENYEGQGLSTSSSDNASSNLTTYSFAGLFMVIGILSLLALAVSESHIWQKPVILARTYSRQLLMSWSFTRTSSLKGGSTSRRTIDGEGFTMRENNQNIGLQADHIKPCQLFDV 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00021 516 Pfam Bacterial extracellular solute-binding proteins, family 3 69 400 IPR001638 -
Pral5280g00021 516 SMART GluR_14 40 401 IPR001320 GO:0015276|GO:0016020
Pral5280g00021 516 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Pral5280g00021 516 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 453 IPR015683 -
Pral5280g00021 516 SUPERFAMILY Periplasmic binding protein-like II 13 402 - -
Pral5280g00021 516 Gene3D - 296 406 - -
Pral5280g00021 516 Pfam Ligand-gated ion channel 401 437 IPR001320 GO:0015276|GO:0016020
Pral5280g00021 516 Gene3D - 34 164 - -
Pral5280g00021 516 Gene3D - 165 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00021 Pral-Chr5280 262740 265864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00021 38 445 Ion Channels AT2G29120 37.010 4.71e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00021 K05387 - pcin:129319703 630.557