Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00020 ATGGCAGCCCCAAATAACTATTATTACGGCTACCTTCTAATAATTACCTGTGTTGTGTTGTTAACAGCTCAGGTTAGAGCAGGCGATGATGATAAGGCCGCGGGTTCACTCCTAGGAGGAAAGAAGTTGATAATAGGTGTTCCCAAGAAACCAGCCAGCGGCTTCGTCCAATTTGTGGATTTACAACTCAATTCAAGTAATAAGAATCAGGTCGTCAAGGCTACGGGCTTTTCCATTGACGTCTTCGAAGCTGTAATAGCTTACCTTAAGAGTTTGCATTACAATATTTCTTTCGAGTTTAGAGCTTTTGTAGGCGCACATGGAAACAGTGCTGGAAATTACGACGCACTCGTCTATCAGATTTTTGAAGGAAAGTATGATGCTGTGGTGGGAGATGTGGCGATTGTGGCAAATCGATCAAAGTACGTAGATTTTACATTACCATATAGACCGGCTGATATGAGGATGCTCGTGAAGATTCGTCGTGATCCACGGTTCAGAGGTGTCATAGTCTTCATGGAACGTCCAGTCGATGAAGATTCACCCTGCTGGAAACAACTCTGCAAGTTTGCTGTCCTGTGGCTTCCTGTAATGCAGGCAGTTCTTCCTGAAAGAAAATCAGTGGCCAAAGCAGGCTCTAGGTTTGTGTTGGTGTTATGGCTGATACTAGCATTTGTGCTGATGCAAAGTTACACAGCATGCCTATCATCGATTTTGACAGTACATCAGTTACAACCTAGTTATCCTGGCGAGAATGACGTTATAAATGATCCCAACATTAACATTGGATATCCTGGTGTCTCATTCTTGAGGGGCTTATTCGTCCATCACTTGAAGATTGATAGTTCGAGGTTGAAGAAGTACTCCAGTATTAACGAGTACAAGGAGGCTTTGGACAAAGGAAGCCGTAAAGGGGGTGTGGATGCTATTTTTAATGAAATTTCCTACCTTAAGATCTTCCTCAGCCAATATGGTTATTCTAATTATGCCTTGGTCCAAACCAGGCACCGCAATGATGGATATGGTTTTGCATTCCCAAAAGGCTCCAACTTAACCTCGTGCTTTTCTAGAGCCATACTAAATGTGAGAGAGAGTGAAGAAATGGACAGGATTGAGCAGGAATATTTTGGAAGCAATGATATCCGCAAGGAAGGCAAAGAAGACATAACCAATAATGCATCAGCAAACAATGCAAGTCCTAGCCTTACCGCTTATAGTTTTGCAGGTCTATTCATGAATCTTCGAAGGCCAAGGAAACACATATACCAGTAG 1272 0.4269 MAAPNNYYYGYLLIITCVVLLTAQVRAGDDDKAAGSLLGGKKLIIGVPKKPASGFVQFVDLQLNSSNKNQVVKATGFSIDVFEAVIAYLKSLHYNISFEFRAFVGAHGNSAGNYDALVYQIFEGKYDAVVGDVAIVANRSKYVDFTLPYRPADMRMLVKIRRDPRFRGVIVFMERPVDEDSPCWKQLCKFAVLWLPVMQAVLPERKSVAKAGSRFVLVLWLILAFVLMQSYTACLSSILTVHQLQPSYPGENDVINDPNINIGYPGVSFLRGLFVHHLKIDSSRLKKYSSINEYKEALDKGSRKGGVDAIFNEISYLKIFLSQYGYSNYALVQTRHRNDGYGFAFPKGSNLTSCFSRAILNVRESEEMDRIEQEYFGSNDIRKEGKEDITNNASANNASPSLTAYSFAGLFMNLRRPRKHIYQ 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00020 423 Gene3D - 271 380 - -
Pral5280g00020 423 CDD GluR_Plant 41 376 - -
Pral5280g00020 423 Pfam Bacterial extracellular solute-binding proteins, family 3 73 377 IPR001638 -
Pral5280g00020 423 Gene3D - 36 170 - -
Pral5280g00020 423 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 412 IPR015683 -
Pral5280g00020 423 Pfam Ligand-gated ion channel 378 412 IPR001320 GO:0015276|GO:0016020
Pral5280g00020 423 Gene3D - 189 270 - -
Pral5280g00020 423 SMART GluR_14 42 378 IPR001320 GO:0015276|GO:0016020
Pral5280g00020 423 SUPERFAMILY Periplasmic binding protein-like II 14 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00020 Pral-Chr5280 244495 252581 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00020 40 412 Ion Channels AT5G11210 33.005 2.80e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00020 K05387 - pcin:129319703 472.626