Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00019 ATGGCCATTCGCTGCATGAAAATGGCTCATGATGACTTCTATAAACACTATTCTCATTACCAAACAAGGCTTGATCTTCGAACCAGGGATTCTGAGAATGATGTTGTCAAAGCAGCATCTGCAGCTTTCCATTTGATGACGAATGAAAACGTGCATGCAATTATTGGACCTTTATTTTCGGAACAAGCGAGGTTCGTAATACAACTTGGGCACAGATATCAGGTGCCCATCGTCTCGTTTTCAGCCACAAGTCCATCTCTCACTCCAAACAGAAGCAAATTTTTCATTAGGACAGCACAAGATGATTGCTCACAGGTGCGGGCTATAGCTGCCATTGTTGAAGCTTACGGATGGCACGAAATCATCCCAATCTACGAAGACACCGAGTATGGCAAGGGTCTGATCCCATATATCACAGATGCCTTGGAGAAAGTTAACACGCGAGTGCCGTACAGAATTCCCATCGATCCAAATTCTGAGGAATATGACATTTTAGATGAGTTGAAGAAGCTCAATCAGAGTCGAAAAAGAATATTTCTTGTTCACATGACTAGTCTTATTGGTCCGAAATTCTTCTCAGCAGTGAACAAGGCTGGAATGATGACGGAAGGGTATGGGTGGATAGTCACCGGTGGATTATCCAATGTGTTAGACCCTTTGGCTCCGAAAGTGATGGATTCCATGCAAGGTGTCTTAGGGGTAAGGCCGAGATTGGAAAAGTCTAAAGGGCTTACAATTTTCAGAAATAGATGGAAAGCTTCGTCAATTAAATCTGGTAATGTGTCTTTTCCCCTAACCTTGTTTGGACTTTGGGCTTATGACACAGTTTGGGCGATAGCCATGGCAGTAGAGTCCAAGTTTGCAAGTTCTAAGGGTAATGATACACTTATAGATAGAATCCTAGATACTAAATTCGAAGGCCTCTCCGGGAATTTCCATTTAAGTGAAGGACAACTCGAAACCTTAGAGCTTGAAGTATTCAATGTGGTAGGACGCAAGGAGAGGGTTATTGGATATTGGAGCCCACAGCGAGGACTATTCCACAACAATCATTTGAGTTCAAGATTGAAACTAATGCCACCAATATGGCCGGGGGACGTAATAAATCAACCAACCAAGTTGAGAATTGGGGTCCCAGTAAGAAAGGGCTTTAATGAATTTTTGAAGGTGGAAACACGCCCTTCAAATAGTACTCCAGATGTTTCTGGCTTTACCATTGATGTGTTTAACGAAGTGCTCAATGCTTTACCTTTTCCTTTTCCATATGAGTTCCTCGCATTCCAGAAGAAGAATGGAGAAAGTACTGAGTCTTATGATGAGCTTGTTCTTCAAATTGAGAAAAAGGAGTATGATGCTGTGGTTGGGGACATAACTATTGTAGCTAATCGTGCAGACCATGTTGATTTCACGCTGCCATATTCAGAATCTGGCGTGTTAATGGTTGTTTCGATGAAGCACGATGAGAGAGAAAATATGTGGATCTTCTTAAAGCCTTTGAGTCCAGGTCTTTGGCTGACCACAGGTGCAGCCTTTGTCCTCACAGGTATCATTATATGGCTTCACGAACGTCGAACAAACACAGAATTTCAAGGGTCCCCACAGCACCAACTTGGCATCATGTTCTGGTTTTCTTTCTCCACCATAGTCTTTGCTCACAAGGAAAGATTAGTGAACAATTGGTCGCGTTTTGTGCTGATCTTATGGGTATTTGCGTTGCTAATCATAACACAAAGTTACACTGCAAGTTTAGGTTCCATGTTAACTGTACAAAGTTTGCAGCCTAAGTTCATCGATGTAAAAGACATAAAAAATAATAATTACTGTGTGGGACATCAGTATGGGTCCTTCGTCAAAAGGCTTCTGAAAAATCAACTGGGATTCACAGAGTCAAAGTTGAAGCCATACCAAACACCTGAAGAATATGATCGAGCTCTCTCTAGTGGTGAGATTGCTGCTTTCTTTGATGAAATCCCCTACGCGAAGCTCTTCCTCTCAAGATACGGCTCCAAGTATGCTATGGTGGGGCCAACTTACAAGACTGCTGGATTTGGCTTCGCATTTCCACTAAGATCTCCGTTGGTATCTTATTTTTCAAGGGCAATCCTAAATGTGACTCAAGATGAAGAAAAATTTGAGAGGATTAGGGGCAAGTACTTCTCCAGCAAAATCCTATCCGAAGATGAAAGTGGATCATCAATCCCAAACAGTCAGACTAGTCTTACAGTGTCCAGCTTTGGAGGGCTTTTCATCATCACAGGGGTCGCTTCTGGGATTTCACTTCTGTTCTATTTGTTTAAGTTTGGGTACTCTCGTTCAGAGGAAAAACTTCTTTGGTTGTTGCGGTTAAAGGCCCGAATAGTGAAGTGCATGGATCGAAAGAATAGCTCTTTATCTGTGAACAGAAGTGATGCCAGGGTACATCCTGCAGAGGGACATAGAGCCATTACTTCCCAGAACGAACAAGATCAGCTACCTTCTCCAGAGCATAGTGACACCATTGAGCGTGCTCATCAGTCAGCACAAGAAATAGAGAGAAAAGAGTAG 2544 0.4257 MAIRCMKMAHDDFYKHYSHYQTRLDLRTRDSENDVVKAASAAFHLMTNENVHAIIGPLFSEQARFVIQLGHRYQVPIVSFSATSPSLTPNRSKFFIRTAQDDCSQVRAIAAIVEAYGWHEIIPIYEDTEYGKGLIPYITDALEKVNTRVPYRIPIDPNSEEYDILDELKKLNQSRKRIFLVHMTSLIGPKFFSAVNKAGMMTEGYGWIVTGGLSNVLDPLAPKVMDSMQGVLGVRPRLEKSKGLTIFRNRWKASSIKSGNVSFPLTLFGLWAYDTVWAIAMAVESKFASSKGNDTLIDRILDTKFEGLSGNFHLSEGQLETLELEVFNVVGRKERVIGYWSPQRGLFHNNHLSSRLKLMPPIWPGDVINQPTKLRIGVPVRKGFNEFLKVETRPSNSTPDVSGFTIDVFNEVLNALPFPFPYEFLAFQKKNGESTESYDELVLQIEKKEYDAVVGDITIVANRADHVDFTLPYSESGVLMVVSMKHDERENMWIFLKPLSPGLWLTTGAAFVLTGIIIWLHERRTNTEFQGSPQHQLGIMFWFSFSTIVFAHKERLVNNWSRFVLILWVFALLIITQSYTASLGSMLTVQSLQPKFIDVKDIKNNNYCVGHQYGSFVKRLLKNQLGFTESKLKPYQTPEEYDRALSSGEIAAFFDEIPYAKLFLSRYGSKYAMVGPTYKTAGFGFAFPLRSPLVSYFSRAILNVTQDEEKFERIRGKYFSSKILSEDESGSSIPNSQTSLTVSSFGGLFIITGVASGISLLFYLFKFGYSRSEEKLLWLLRLKARIVKCMDRKNSSLSVNRSDARVHPAEGHRAITSQNEQDQLPSPEHSDTIERAHQSAQEIERKE 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00019 847 Pfam Ligand-gated ion channel 721 755 IPR001320 GO:0015276|GO:0016020
Pral5280g00019 847 FunFam Glutamate receptor 368 492 - -
Pral5280g00019 847 CDD GluR_Plant 373 719 - -
Pral5280g00019 847 MobiDBLite consensus disorder prediction 827 847 - -
Pral5280g00019 847 SUPERFAMILY Periplasmic binding protein-like I 5 341 IPR028082 -
Pral5280g00019 847 CDD PBP1_GABAb_receptor_plant 1 347 IPR044440 -
Pral5280g00019 847 FunFam Glutamate receptor 101 255 - -
Pral5280g00019 847 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 805 IPR015683 -
Pral5280g00019 847 FunFam Glutamate receptor 492 622 - -
Pral5280g00019 847 Pfam Bacterial extracellular solute-binding proteins, family 3 400 720 IPR001638 -
Pral5280g00019 847 MobiDBLite consensus disorder prediction 799 847 - -
Pral5280g00019 847 Gene3D - 493 626 - -
Pral5280g00019 847 Pfam Receptor family ligand binding region 5 330 IPR001828 -
Pral5280g00019 847 Gene3D - 7 106 - -
Pral5280g00019 847 SMART GluR_14 375 721 IPR001320 GO:0015276|GO:0016020
Pral5280g00019 847 Gene3D - 107 266 - -
Pral5280g00019 847 PIRSF IGluLR_plant 1 847 IPR017103 -
Pral5280g00019 847 SUPERFAMILY Periplasmic binding protein-like II 366 722 - -
Pral5280g00019 847 Gene3D - 369 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00019 Pral-Chr5280 197343 244549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00019 1 769 Ion Channels AT2G29120 43.457 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00019 K05387 - qsa:O6P43_022275 923.694