Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00018 ATGGCAGCCCCAAATTACTATTGTTACGGCTACCTTGTAATAATTACTTGTGTTGTGTTGTCAGCGGCTCAGGTTAGAGCAGGCGATGATGATAAAGCCGCGGGTTCACTCCTAGGAGGAAAGAAGTTGATAATAGGTGTTCCCAAGAAACCGGCCACCGGCTTCGTCCAGTTTGTGGACTTGGAACTCAATTCAAGCAATAAGAATCAGGTCGTCAAAGCTACGGGCTTTTCCATTGACGCCTTCGAAGCCGTAATAGCTTACCGTAAGAGTTTACATGACAATATTTCTTTCGAGTTCAGAGCTTTTGTAGACGAACATGGAAACAGTGCTGGAAATTATGACGCACTCGTCTATCAGATTTTTGAAGGAAAGTATGATGCTGTGGTGGGAGATGTGGCGATTGTGGCAAATCGATCAAAGTACGTAGATTTTACATTACGATATAGACCGGCTGATATGAGGATGCTCGTGAAGGTTCGTCATGATCCACGGTTGAATATGTGGATTTTTGTACAACCTTTTACTTGGGATCTGTGGTTTTCCATAGCCATCTCTAGTATTTTTATAGGAGGTATCATAGTCTTCCTGGAACGTCCAGTCGATGAAGATTCACCTTGCAGGAAACAACTCTGCAGTTCTGCTATCCTGTGGCTCCCTGTAATGCAAGCGGTCCTTCCTGAAAGAAAATCAGTGGCCAAAGCAGGCTCTAGGTTTGTCTTGGTGTTATGGCTGATGTTAGCATTTGTGCTGATGCAAAGTTACACAGCACGCTTATCATCGATTTTGACAATTGATAGTTCGAGGTTGAAGAAGTACTCCGGTATTGAAGAGTACGAGGAGGCTTTGGACAAAGGAAGCCGTAAAGGGGGTGTGGATGCTATTTTTAATGAAATTTCCTACCTTAAGATCAATATGGTTATTCTAATTATGCCTTGGTCGAAACCAGGCACCGCAATGAGGGATATGGCATTCCCAAAAGGCTCCAACTTAACCTCCTACTTTTCTAGAGCCATACTAAATGTGAGAGAGAGTGAAGAAATGGACAGGATTGAGCAGGAATATTTTGGAAGCAACGATATCCACAAGGAAGGCAAAGAAGACATATCCAATAATGCATCAGCAAACAATGCAAATCCCAGCCTTAGTGCTTATAGTTTTGCAGAATCTTCGAAGGCCAAGGAAACACATATACCAGTAGGGGTAGTTGTTGATCTCAACTCCTCAATTGGAAGAATGGCCATTCGCTGCATGAAAATGGCTCATGATGACTTCTACAAACGCTATTCTCATTACCAAACAAGGCTTGATCTTCGAACCAGGGATTCTCAGAATGATGTCGTCCAAGCAGCATCTGCAGATAATATATTTTTATCAGTTGCAGCCCTAAAATCTTTCCATTTGATGACGAATGAAAACGTGGATGCAATTACTGGACCTTTATTTTCAGAACAAGCGAGGTTCGTAATACAACTTGGGCACAAATATGAGCTGCCATTGTTGAAATGGCACGAAATCATCCCAATCTACGAAGACACGGAGTATGGCAAGGGTCTGATCCCATATCTCACAGACGCATTGGAAAAAGTTAACACACGAGTGCCTTACAGAAGGGCCATCGATCCAAATTCTGATGAATATGAACTTTTAAAGGAGCTGAAGGAGTTAAATCAAAGTGGAAAAAGAATATTTCTTGTTCACATGACTAATCTTCTTGGGCCGAAATTCTTCTCAGCTGTGAACAAGGCTGGAATGATGACGGAAGGGTATGGGTGGATAGTCACCGATGGGTTATCCAATGTGTTAGACCCTTTGGGTCTGAAAGTGGTGGATTCTATGCAAGGTGTCTTAGGGGTAAGGCCAAGAATGGAGAAGTCTAGAGGGCTTACAATTTTCAGAAATAGATGGAAAGCTTCGTCAATTAAATCAGGTAGTGCGTCTTCTCCCTTAACCTTGTTTGGGCTTTGGGCTTATGACACAGTTTGGGGGATAGCCATGGCAGCAGAGTCTAAATTTGCAAATCCCAAGGGTAATGACACTCTTATAGATAGAATCCTAGATACTAAATTCGAAGGTCTATCTGGGAATTTTAAATTGAATCAAGGACAACTCAAACCCTTAGGGCTTGAAGTATTCAATGTGGTAGGACGCAAAGAGAGGGTCATTGGATATTGGAGCCCACAGAGAGGACTATTCCAAGACAATCACTTGAGTTCAAGAGAGAAACTAATGCCACCTATATGGCCGGGGGACGCAAGAAATCAACCAACCAAGTTGAGAATTGGGGTCCCGGTAAGAAAGGGCTTTAATGAATTTTTGAAGGTGGAAACACGGTCAAATAGTACTCCTCCAGATGTTTCTGGCTTTACTATTGATGTGTTTAAAGAAGTGATCATTGCTTTACCTTTTCCTTTTCCATATGAGTTCCTCGCATTCCAGAAGAAGAAAGGAGAAAGTACTGAGTCCTATGATGAGCTTGTTCTCCAAATTGAGAAAAAGGTGTACGATGCTGTGGTTGGGGACATAACTATTGTAGCTAATCGTGCGGACCATGTTGATTTTACGTTGCCATATTCAGAATCTGGCGTGTTAATGGTAGTTTCGATGAAGCACGATGAGAGACAAAATATGTGGATCTTCTTAAAGCCTTTGAGTCCAGGTCTTTGGCTGACCACAGGTGCAGCCTTTGTCCTCACAGGTATCATTATATGGCTTCACGAACGTCGTACAAACACAGAATTTCAAGGATCCCCACAGCAACAACTTGGCGTCATGTTCTGGTTTTCTTTCTCCACCATAGTCTTTGCTCATAAGGAAAGATTAGTGAACAATTGGTCGCGTTTTCTGCTGATCTTATGGGTATTTGTGGTGCTCATCATAACACAAAGTTACACTGCAAGTTTGGCTTCCATGTTAACTGTACAAAGACTGCAGCCTAAGTTCATGGATGTGAATGAGATAAGAAAGAATAATTACTGTGTGGGGTATATGAAGGGGTCTTTTGTCAAAATGCTTCTGAAGAATCAATTGGGATTCAAGGATGAGACGAAGTTGAAGCCGTACGAGACTCCTGAAGAATATGATCGAGCTCTCGCTAGTGGTGAGGTTGCTGCCATCTTTGATGAAATCCCTTACTTGAAGCTCTTCCTCTCAAAATACGGCTCCAAGTATGCTAGTGTGGGACCAACCTACAAAACTGGAGGTTTCGGCTTTGCATTTCCCCTAAAATCTCCGTTGGTGTCTTATTTTTCGAGGGCAATCCTAAATGTGACTCAAGATGAAGAAAAGTTCCAAAGGATTAGGGGGAAGTACTTCTCCAGCGGAGTCACATCCGAAGATGAATATGGATCATCAATCCCAAACAATCCCGTGAGTCTTACTGTGTCCAGCTTTGGAGGGCTTTTCATCATCACAGGGGTCGCTTCTGGGATTTCACTTCTGTTCTATTTGTTTAAGTTTGGGTACTCTCGTTCAGAAGAAAGACTTCTTTGGTTGTTGCAGTTAAAGGCTCGAATAGTGAAGTGCTTGAAACGAAAGAATAGCTCTTTAGCTATGAACAGAACTGATTCCAGAGTACATCCTGCAACTAGTAATACTGTAGAGGGAGATACAGCCATAATTACTGCGTACCCTCGCTGCTGA 3642 0.4253 MAAPNYYCYGYLVIITCVVLSAAQVRAGDDDKAAGSLLGGKKLIIGVPKKPATGFVQFVDLELNSSNKNQVVKATGFSIDAFEAVIAYRKSLHDNISFEFRAFVDEHGNSAGNYDALVYQIFEGKYDAVVGDVAIVANRSKYVDFTLRYRPADMRMLVKVRHDPRLNMWIFVQPFTWDLWFSIAISSIFIGGIIVFLERPVDEDSPCRKQLCSSAILWLPVMQAVLPERKSVAKAGSRFVLVLWLMLAFVLMQSYTARLSSILTIDSSRLKKYSGIEEYEEALDKGSRKGGVDAIFNEISYLKINMVILIMPWSKPGTAMRDMAFPKGSNLTSYFSRAILNVRESEEMDRIEQEYFGSNDIHKEGKEDISNNASANNANPSLSAYSFAESSKAKETHIPVGVVVDLNSSIGRMAIRCMKMAHDDFYKRYSHYQTRLDLRTRDSQNDVVQAASADNIFLSVAALKSFHLMTNENVDAITGPLFSEQARFVIQLGHKYELPLLKWHEIIPIYEDTEYGKGLIPYLTDALEKVNTRVPYRRAIDPNSDEYELLKELKELNQSGKRIFLVHMTNLLGPKFFSAVNKAGMMTEGYGWIVTDGLSNVLDPLGLKVVDSMQGVLGVRPRMEKSRGLTIFRNRWKASSIKSGSASSPLTLFGLWAYDTVWGIAMAAESKFANPKGNDTLIDRILDTKFEGLSGNFKLNQGQLKPLGLEVFNVVGRKERVIGYWSPQRGLFQDNHLSSREKLMPPIWPGDARNQPTKLRIGVPVRKGFNEFLKVETRSNSTPPDVSGFTIDVFKEVIIALPFPFPYEFLAFQKKKGESTESYDELVLQIEKKVYDAVVGDITIVANRADHVDFTLPYSESGVLMVVSMKHDERQNMWIFLKPLSPGLWLTTGAAFVLTGIIIWLHERRTNTEFQGSPQQQLGVMFWFSFSTIVFAHKERLVNNWSRFLLILWVFVVLIITQSYTASLASMLTVQRLQPKFMDVNEIRKNNYCVGYMKGSFVKMLLKNQLGFKDETKLKPYETPEEYDRALASGEVAAIFDEIPYLKLFLSKYGSKYASVGPTYKTGGFGFAFPLKSPLVSYFSRAILNVTQDEEKFQRIRGKYFSSGVTSEDEYGSSIPNNPVSLTVSSFGGLFIITGVASGISLLFYLFKFGYSRSEERLLWLLQLKARIVKCLKRKNSSLAMNRTDSRVHPATSNTVEGDTAIITAYPRC 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00018 1213 Gene3D - 752 877 - -
Pral5280g00018 1213 Gene3D - 36 168 - -
Pral5280g00018 1213 SUPERFAMILY Periplasmic binding protein-like II 16 358 - -
Pral5280g00018 1213 SMART GluR_14 758 1107 IPR001320 GO:0015276|GO:0016020
Pral5280g00018 1213 SMART GluR_14 42 358 IPR001320 GO:0015276|GO:0016020
Pral5280g00018 1213 SUPERFAMILY Periplasmic binding protein-like I 395 726 IPR028082 -
Pral5280g00018 1213 SUPERFAMILY Periplasmic binding protein-like II 755 1107 - -
Pral5280g00018 1213 Pfam Receptor family ligand binding region 502 715 IPR001828 -
Pral5280g00018 1213 CDD GluR_Plant 758 1105 - -
Pral5280g00018 1213 Gene3D - 397 499 - -
Pral5280g00018 1213 Gene3D - 500 650 - -
Pral5280g00018 1213 Pfam Ligand-gated ion channel 1107 1141 IPR001320 GO:0015276|GO:0016020
Pral5280g00018 1213 Pfam Bacterial extracellular solute-binding proteins, family 3 786 1106 IPR001638 -
Pral5280g00018 1213 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 400 1174 IPR015683 -
Pral5280g00018 1213 Gene3D - 169 296 - -
Pral5280g00018 1213 Gene3D - 878 1018 - -
Pral5280g00018 1213 FunFam Glutamate receptor 753 877 - -
Pral5280g00018 1213 Pfam Ligand-gated ion channel 177 269 IPR001320 GO:0015276|GO:0016020
Pral5280g00018 1213 FunFam Glutamate receptor 877 1007 - -
Pral5280g00018 1213 FunFam Glutamate receptor 498 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00018 Pral-Chr5280 171227 183140 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00018 40 356 Ion Channels AT2G29120 34.341 5.36e-46 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00018 K05387 - qsa:O6P43_022275 835.869