Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00016 ATGGACCTGAAACCAGCATCGAGGTCCAGCCAGATGAAAAAGAGGAGCTTTAACCTTTGCCTCTGGTTTTGCCGCTTTGGTACTTTGCTTTGGTTCTCTGCGGAAACGTCGAAGGCGAAGCAGGCACAAATACCAGTAGGCGTAGTTGTTGATCTCAACTCCTCAGTTGGAAGCATGGCCATGCGCTGCATCCAAATGGCTCATGACGACTTCTATAAACACTATTCTCATTACCAAACAAGACTTGATCTTCGAATCAGAGATTCTGAGAATGATGTCGTCACAGCAGCATCTGCAGCTTCCGACCTGATGAAGAATGAAAACGTGCATGCAATTATCGGACCTTTATTTTCAGAACAGGCGAGTTTCGTAACACGACTTGGGCACAAATCTCATGTGCCCATCGTCTCGTTTTCAGCCACAAGTCCATCTCTTCCTCCGCTCCGGAGCAAATTCTTCATAAGGACAGCACAAGATGATCGCTCACAGGTGCAGGCTATAGCTGCCATTGTTCAAGCTTACGGATGGCACGAAATCATCCCAATCTGCGAAGACACCGAGTATGGCAAGGGTCTGATCCCATATCTCACAAAGGCCTTGGAGAAAGTTAACACACGGGTGCCTTACAGAATTGCCATCGATCCGAATTCTGAGGAATATGATATTCTAGAGCAGCTGAAGGAGCTCAATCAGAGTCGAAAAAGAATAATTCTGGTTCACATGACTAGTCTTGTTGGGCCCAAATTCTTCTCAGCAGTGAACAAGGCTGGAATGATGACGGAAGGGTATGGGTGGATAGTCACCGACGGGTTGTCCAATGTGTTAGCCCCTCTGGGTCCGAAAGTGATGGATTCTATGCAAGGTATCGTGGGGGTAAGGCCAAGACTGGAAAAGTCAAGAAGGCTTACAAGTTTCAGAAAAAGATGGAAAGCTTCGTCAATTAAATCAGGCAGTGTGTCTTCTTCCTTAACCTTGTTTGGACTTTGGGCTTATGACACAGTTTGGGCCATAGCCATGGCAGTAGAGTCTACATTTGCAAATTATAAGGGTAATGACACACTTATAGATAGAATCCTAAGTACTAAATTTGAAGGCCTCTCTGGGAATTTCAATTTGAGTGAAGGACAACTCGAACCCTTGGAGCTTGAAGTATTCAATGTGGTAGGACGCAAAGAGAGGATCATTGGACGTTGGAGCCCCCAGAGAGGACTATTCCTCGACAATCATTGGAGTTCAAGAGGGAAACTGATGCCACCAATATGGCCGGGGTACACAACAAATCAACCAACCAAGTTGAGAATTGGGGTCCCAGTAAGAAAGGGTTTTGTTGAATTTTTGAAGGTGGAAAGGCGGTCGTCAAATAGCACTCCGGATGTCTCTGGCTTTAGTATTGATGTGTTTCTGGAAGTGATAAAAGCTTTACCTTTTCCTCTTCCATATGAGTTTGTCCCGTTGCGGATTGGAAGCACTGGGTCCTCTGGAGGGCTTTTTAAGGAGCATGATGCTGTGGTTGGAGACATAACTATCGTAGCTAACCGTGCGGAACATGTTGACTTTACATTGCCGTTTTCAGAATCTGGGGTGTCAATGGTTGTTTCAATGAAATACGATGAGAGACAAAACATGTGGATCTTCTTAAAGCCTTTGAGTCCAAGTCTTTGGCTGACCACAGGTGCAGCATTCGTCCTCACAGGTATCACTATATGGCTTCACGAGCGGCAAACAAACCCAGAATTTCAAGGATCACCACAGCAACAACTTGGGATGGTGTTCTGGTTTTCTTTCTCCACCTTAGTCTTTGCTCACAGTAAATCTCCTCTCTTTAAACTCATACATTACATATTTCATGATCTCTAG 1857 0.4518 MDLKPASRSSQMKKRSFNLCLWFCRFGTLLWFSAETSKAKQAQIPVGVVVDLNSSVGSMAMRCIQMAHDDFYKHYSHYQTRLDLRIRDSENDVVTAASAASDLMKNENVHAIIGPLFSEQASFVTRLGHKSHVPIVSFSATSPSLPPLRSKFFIRTAQDDRSQVQAIAAIVQAYGWHEIIPICEDTEYGKGLIPYLTKALEKVNTRVPYRIAIDPNSEEYDILEQLKELNQSRKRIILVHMTSLVGPKFFSAVNKAGMMTEGYGWIVTDGLSNVLAPLGPKVMDSMQGIVGVRPRLEKSRRLTSFRKRWKASSIKSGSVSSSLTLFGLWAYDTVWAIAMAVESTFANYKGNDTLIDRILSTKFEGLSGNFNLSEGQLEPLELEVFNVVGRKERIIGRWSPQRGLFLDNHWSSRGKLMPPIWPGYTTNQPTKLRIGVPVRKGFVEFLKVERRSSNSTPDVSGFSIDVFLEVIKALPFPLPYEFVPLRIGSTGSSGGLFKEHDAVVGDITIVANRAEHVDFTLPFSESGVSMVVSMKYDERQNMWIFLKPLSPSLWLTTGAAFVLTGITIWLHERQTNPEFQGSPQQQLGMVFWFSFSTLVFAHSKSPLFKLIHYIFHDL 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00016 618 CDD PBP1_GABAb_receptor_plant 46 405 IPR044440 -
Pral5280g00016 618 Pfam Receptor family ligand binding region 62 388 IPR001828 -
Pral5280g00016 618 Gene3D - 65 379 - -
Pral5280g00016 618 Pfam Bacterial extracellular solute-binding proteins, family 3 458 534 IPR001638 -
Pral5280g00016 618 Pfam Ligand-gated ion channel 552 606 IPR001320 GO:0015276|GO:0016020
Pral5280g00016 618 SMART GluR_14 431 616 IPR001320 GO:0015276|GO:0016020
Pral5280g00016 618 PANTHER OS06G0188250 PROTEIN 19 383 - -
Pral5280g00016 618 Gene3D - 159 404 - -
Pral5280g00016 618 FunFam Glutamate receptor 159 314 - -
Pral5280g00016 618 Gene3D - 543 610 - -
Pral5280g00016 618 SUPERFAMILY Periplasmic binding protein-like I 41 423 IPR028082 -
Pral5280g00016 618 Gene3D - 425 542 - -
Pral5280g00016 618 SUPERFAMILY Periplasmic binding protein-like II 427 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00016 Pral-Chr5280 160564 162641 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00016 17 614 Ion Channels AT2G29120 39.375 7.17e-150 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00016 K05387 - qsa:O6P43_022275 644.81