Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00009 ATGGAATTCGAGAAGGGGAAAATTGTCAGATTCTTCTCGGATGGTAAAAATCATAAGGAAGAGGAACCACTGTGGCGAGGAACTGAACTTTCAACGCTGGAAAAGCCATCATCTGGATACAGTGTTTCGTCGGCTTCCTCGCTAAAGCAAGACAATGCACTAACGTGGGGGAAGAATAGATTGGTTGAAACATTTAAAGTTGGGGGATCTAAGGTGTTTCCGGAGGACCCCGAACCATGGCGCAAAAGGATACTGGATCCATCTAGTGAGATTGTGTTGAAATGGAACCGGGTCTTCATAGTTTCGTGCTTGATGGCTCTTTTTGTAGACCCGTTGTATCTTTACTTGCCCAGCGTGAGCCGACTTGCAAGGTCTTCATGTGTGAGGACAGACCTGAATTTACGGATTGCTGTGACCTTTTTACGGACCGTCACAGACTTTTTTTATCTATTACACTTGATAATTAAGTTCCGGACAGCATATGTGGCACCTAGCTCGCGGGTATTTGGTCGGGGTGAACTTGTCACAGACCCAAAGAAAATTGCAAGAAGATATATCAGATCCGATTTCTTCATTGATTTTATTGCTACTCTGCCTCTTCCCCAAATGCTCATTTGGTTTATTATACCCGCAACAAGAAGCCCTCTTGCTGATCAGAATAATAATGCTCTGGCATTGATTGTTCTGCTCCAATATGTTCCAAGATTGTATTTGATCTTTCCACTCAGTTCTGAAATAATTAAAGCAACTGGAGTGGTTACAAAGACTGCATGGGCGGGAGCTGCGTATAATCTGCTTTTGTATATGCTGGCCAGTCATGTTTCAGGAGCGGCATGGTATCTTCTATCAGTGGACCGTTATACCTATTGTTGGAAATCTTTTTGCAAAAAGGATTCTAGTCCTAAAGATTGCTTTGTTTACCTGGACTGTGATTCTCTTAACCGTGAGCAGCGCAAAATATGGGCAAATGTTACAAGTGTGTTCAACAACTGCGATCCCAGCAAAAAACTTTTTGCTTTTGGCATATTCGAATCTGCAGTGTCAAAACATGTTGTCTCCACAAACTTCATGTCAAAGTATTTCTATTGTTTATGGTGGGGTTTGCAGCAACTTAGTTCTTATGGGCAGAACTTAGAGACGAGCACTTTTATGGGCGAGACATCATTTTCTATTCTGATTGCCATCCTGGGTCTTGTGTTGTTTTCCCATTTGATTGGGAACATGCAGACATATTTGCAGTCAACCACCATAAGGCGTGAGGAGTGGAGGCTCAAGCGAAGAGACACTGAAGAATGGATGAGACATCGCCAACTACCTGAAGATTTGAAACGACGTGTTCGACGATTTGTTCAGTATAAGTGGCTTGCAACACGAGGAGTTGATGAAGAAACAATTCTACGTGGATTACCTGCTGATCTTCGTCGTGATATCCAACGCCACCTGTTCTTAGACCTTGTTCGACGAGTTCCCTTCTTCTCACAGATGGATGATCCGCTGCTAGATGCAATATGTGAGCGGCTGGAATCCTTTCTGAGCACTCAGGGAACCTACATTGTTCGAGAGGGAGACCCTGTGACGGAAATGCTCTTTATTATTAGAGGTAGACTAGATAGTTCTACTACAAATGGGGGTCGGAGTGGTTTCTTCAACTCAATCATATTGAGACCTGGAGATTTTTGTGGCGAGGAGTTACTTGCTTGGGCATTGCTTCCAAAATCAACCGTGAACCTGCCTTCTTCAACCAGGACTCTTAAATCTCTTACCGAGGTTGAAGCTTTTGCTCTCCGGGCTGAAGACCTCAAGTTTGTGGCGAATCAATTTAGGCGCCTCCACAGCAAGAAGCTGCAGCACACGTTCCGGTTCTATTCCCATCACTGGAGGACTTGGGCAGCCTGCTTCATACAGGCTGCATGGCACCGATATAAGAAACGGATGTCTGCCAAAGATATTGCTTTTAGGGAATCCTTCACTATGGATTCAAATGTGGCCAATGAGAGAGAACACGGGGATGAAAGTCCTGCCGATTCAAATTGTTCTCAAACTAAATTAAACCTTGGGGTCACTTTACTTGCGTCAAGGTTTGCTGCAAACACAAGAAGGGGAGCTCTTAAGATTAAAGATGACCTGCCAAAACTACAAAAGCCTGAAGAACCTGACTTTACTTCTGAAGCTGATGATGACTAG 2184 0.4396 MEFEKGKIVRFFSDGKNHKEEEPLWRGTELSTLEKPSSGYSVSSASSLKQDNALTWGKNRLVETFKVGGSKVFPEDPEPWRKRILDPSSEIVLKWNRVFIVSCLMALFVDPLYLYLPSVSRLARSSCVRTDLNLRIAVTFLRTVTDFFYLLHLIIKFRTAYVAPSSRVFGRGELVTDPKKIARRYIRSDFFIDFIATLPLPQMLIWFIIPATRSPLADQNNNALALIVLLQYVPRLYLIFPLSSEIIKATGVVTKTAWAGAAYNLLLYMLASHVSGAAWYLLSVDRYTYCWKSFCKKDSSPKDCFVYLDCDSLNREQRKIWANVTSVFNNCDPSKKLFAFGIFESAVSKHVVSTNFMSKYFYCLWWGLQQLSSYGQNLETSTFMGETSFSILIAILGLVLFSHLIGNMQTYLQSTTIRREEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWLATRGVDEETILRGLPADLRRDIQRHLFLDLVRRVPFFSQMDDPLLDAICERLESFLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRSGFFNSIILRPGDFCGEELLAWALLPKSTVNLPSSTRTLKSLTEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWHRYKKRMSAKDIAFRESFTMDSNVANEREHGDESPADSNCSQTKLNLGVTLLASRFAANTRRGALKIKDDLPKLQKPEEPDFTSEADDD 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00009 727 SMART cnmp_10 491 622 IPR000595 -
Pral5280g00009 727 MobiDBLite consensus disorder prediction 705 719 - -
Pral5280g00009 727 FunFam Cyclic nucleotide-gated ion channel 1 489 607 - -
Pral5280g00009 727 PRINTS EAG/ELK/ERG potassium channel family signature 404 413 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5280g00009 727 PRINTS EAG/ELK/ERG potassium channel family signature 153 162 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5280g00009 727 PRINTS EAG/ELK/ERG potassium channel family signature 270 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5280g00009 727 PRINTS EAG/ELK/ERG potassium channel family signature 386 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5280g00009 727 PRINTS EAG/ELK/ERG potassium channel family signature 454 461 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5280g00009 727 PRINTS EAG/ELK/ERG potassium channel family signature 360 377 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5280g00009 727 SUPERFAMILY Voltage-gated potassium channels 86 413 - -
Pral5280g00009 727 FunFam Cyclic nucleotide-gated ion channel 1 418 482 - -
Pral5280g00009 727 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 77 720 - -
Pral5280g00009 727 Gene3D Jelly Rolls 489 609 IPR014710 -
Pral5280g00009 727 CDD CAP_ED 491 622 IPR000595 -
Pral5280g00009 727 Gene3D Helix hairpin bin 417 481 - -
Pral5280g00009 727 Pfam Cyclic nucleotide-binding domain 514 602 IPR000595 -
Pral5280g00009 727 SUPERFAMILY cAMP-binding domain-like 418 613 IPR018490 -
Pral5280g00009 727 MobiDBLite consensus disorder prediction 705 727 - -
Pral5280g00009 727 Gene3D - 99 415 - -
Pral5280g00009 727 ProSiteProfiles cAMP/cGMP binding motif profile. 491 574 IPR000595 -
Pral5280g00009 727 Pfam Ion transport protein 95 419 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00009 Pral-Chr5280 93351 98431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00009 1 726 Ion Channels AT4G30360 66.303 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00009 K05391 - gmx:100808425 1192.56