Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5280g00006 | ATGCCTCCTCCTAGTCCTCCTATTCATCACCATGAACAAACCCAACCTAAGCCCAGCCCCAAGCTCCTATCAATCCTCCTTAAAGCCGTCATCATGACCCTTCTCACCTCCGTCTTTTTCATCTTCCTCGGTTTCGCTGCCTTCGTCCTTCTCCATCTCTGCTTCATCGGCGGCATCTTCCACCGCATCCGCTCCCGCCCCACCATCCAACTCGGTGCTTCATCCAATGGAATCGCTCCTCGTGACGTCAAGAAGCTGCCCCACTTCCGGGTTGCTAGCGGAACCGAACCCGGACCCGAAACTCAATGCGTTGTCTGCTTGGATGGCTTCAGGAGCGGCCACTGGTGCAGAAAGCTCGCCGGATGTGGCCATGTGTTCCACCGGAGATGTGTGGATACGTGGTTGGTGAAGGTGGCCGCGTGCCCCACATGCAGGACGCCTGTTCGATCAAATGCAGGGAGCGCTGTAGGTTCGGCTCTAGATGTCAATAGAGAGGAGGCTATGCGACATCGAACATCTAGTAGGGGCAGTGCATACAGGATTTTTTAG | 549 | 0.5556 | MPPPSPPIHHHEQTQPKPSPKLLSILLKAVIMTLLTSVFFIFLGFAAFVLLHLCFIGGIFHRIRSRPTIQLGASSNGIAPRDVKKLPHFRVASGTEPGPETQCVVCLDGFRSGHWCRKLAGCGHVFHRRCVDTWLVKVAACPTCRTPVRSNAGSAVGSALDVNREEAMRHRTSSRGSAYRIF | 182 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5280g00006 | 182 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 10 | 165 | - | - | |
| Pral5280g00006 | 182 | SMART | ring_2 | 103 | 144 | IPR001841 | - | |
| Pral5280g00006 | 182 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - | |
| Pral5280g00006 | 182 | SUPERFAMILY | RING/U-box | 98 | 151 | - | - | |
| Pral5280g00006 | 182 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 154 | IPR013083 | - | |
| Pral5280g00006 | 182 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5280g00006 | Pral-Chr5280 | 61377 | 62374 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5280g00006 | 17 | 149 | C3H Transcription Factor Family | AT2G18670 | 45.522 | 2.68e-31 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5280g00006 | - | - | gmx:102664895 | 208.379 |