Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5280g00005 ATGGGCAGAAGCAGAGCTTTGTTAGAAGTGAAAGGAGCAACCTTTTTGTCTCCCTCACAAACCCCGCCGCCACCATACTTGATTTCGCCTCCCAACGTTGTTGGATCTGAAGATTCGAATCTAAAAGACAGCGTCAGCCCCAGCGTACTCCTCATCATCATCATCCTCGCCATCGTTTTCTTCGTCTCTGGTTTGCTCCACCTTCTTATTCGCTATCTATGGCGGCCACAAACCAGAGACCCGGACGATTTAGACACTACTGTTCTTCAGGGACAGCTTCAGCAACTGTTCCACCTCCATGATTCGGGAGTCGACCAATCCTTCATCGACACCCTCCCTGTCTTCCCATACAAGGCCATCATCGGACTCAAGAACCCTTTCGATTGCGCCGTTTGTTTGTCGGAATTCGAGCCGGAGGACAAGCTCCGATTGTTGCCCAAATGCAGCCATGCGTTCCATATGGATTGTATCGACACTTGGCTCTTGTCTCACTCTACCTGCCCCATTTGTCGAGCCTGCTTGCTCAATGATTTCTCCTCCAGCAACGGTTGTTCCCCCATTGTTCTGGTCCTCGAATCTGGAAGTGACAACAACTCCAGGGAGATTGCCCCAGAGACAGACGAAATCGGATCCAGGTCCACCCGGTTGGACTCGAATCCCGATTCGCGTGAAGTGGTCACTGTGAAGCTGGGAAAGATCAGAAATGTGGATAATAACAATGGTGAAGGTAGCAGCAGTATTGGTGATAATGCGGATGCAAGAAGGTGCTTCTCTATGGGGTCTTTTAGTTATGTGATGGACGAGAGTTCTTTGCTTCATGTACCCATTAGAGCACAAATAAAAAAGAAGCACGCTTTGCGATTAACTACAGGAAACAGACTCGCAATGTCAGAGTGTGACTTTGAATCGAGAAGGGATTTCAGATTCTCAGGTTTGGATGGGAACAGGGTTGAAGAAGAAACTGCAGATAATTCAGTCTCTGGGGTTGTTACCAGAAAGGAGAGTTTTTCGGTGTCCAAGATTTGGCTTCGGGAGAAGAAAGAGAAGCGGAATAATGTGCTTGAGGATTCGTCAAGGAGGGCTGTGTCGTTTAGGTTTCCATTGCAGATAAACGAGGATGATGGCGATGCCTTGAAGGAGAGGAATGGGAAATTGGAATCAAGAAGCACGATTTCTGAGATGGATATTACAAAATGGGAGAATGGAGGAGGGAGTAGTGAATTTGGATATGATGATGAAAACCAGAGTTGTTACAGCGTAGATTCGCAGGCGATTAGGGCCCCTTCTTTTGCAAGAAGAACACTGCTTTGGCTCACAGGAAGACAGAGCAGAGTTGTTCATTCATCCTCTGCTTCTGGCGATTTGTAG 1368 0.4766 MGRSRALLEVKGATFLSPSQTPPPPYLISPPNVVGSEDSNLKDSVSPSVLLIIIILAIVFFVSGLLHLLIRYLWRPQTRDPDDLDTTVLQGQLQQLFHLHDSGVDQSFIDTLPVFPYKAIIGLKNPFDCAVCLSEFEPEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPICRACLLNDFSSSNGCSPIVLVLESGSDNNSREIAPETDEIGSRSTRLDSNPDSREVVTVKLGKIRNVDNNNGEGSSSIGDNADARRCFSMGSFSYVMDESSLLHVPIRAQIKKKHALRLTTGNRLAMSECDFESRRDFRFSGLDGNRVEEETADNSVSGVVTRKESFSVSKIWLREKKEKRNNVLEDSSRRAVSFRFPLQINEDDGDALKERNGKLESRSTISEMDITKWENGGGSSEFGYDDENQSCYSVDSQAIRAPSFARRTLLWLTGRQSRVVHSSSASGDL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5280g00005 455 CDD RING-H2_EL5-like 128 171 - -
Pral5280g00005 455 Pfam Ring finger domain 128 171 IPR001841 -
Pral5280g00005 455 SMART ring_2 129 170 IPR001841 -
Pral5280g00005 455 MobiDBLite consensus disorder prediction 201 219 - -
Pral5280g00005 455 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Pral5280g00005 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Pral5280g00005 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 342 - -
Pral5280g00005 455 SUPERFAMILY RING/U-box 109 177 - -
Pral5280g00005 455 FunFam E3 ubiquitin-protein ligase ATL6 92 177 - -
Pral5280g00005 455 MobiDBLite consensus disorder prediction 198 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5280g00005 Pral-Chr5280 52817 54375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5280g00005 39 452 C3H Transcription Factor Family AT2G18650 43.392 1.70e-86 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5280g00005 - - pcin:129319707 723.391